hypothetical_protein

Euk-Vir

Pagoda_yellow_mosaic_associated_virus

hypothetical_protein__YP_009041480__Pagoda_yellow_mosaic_associated_virus__1505530

Identity

77.0 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Pagoda_yellow_mosaic_associated_virus

TaxID: 1505530

View cluster (15 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-91

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3uumA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.72	53.0	4.70e-01	90.9%	54.9%
6cgaC02	1.20.58.860	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	51.0	5.44e-01	84.1%	88.5%
1ungE00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.64	44.0	3.70e-01	70.5%	61.2%
1sg6A02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.56	41.0	3.18e-01	77.3%	37.6%
6yxr101	1.10.3460.10	Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain	0.55	43.0	3.46e-01	85.2%	86.9%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4314535	150.5.1.64 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF5344	0.71	49.0	5.15e-01	85.2%	78.8%
4938155	5073.1.1.11 ↗	alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C	0.70	60.0	3.85e-01	93.2%	35.2%
3715946	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.69	46.0	4.04e-01	79.5%	48.0%
4013066	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.67	58.0	4.26e-01	93.2%	56.7%
4413752	150.5.1.117 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › V-ATPase_su_f	0.65	50.0	5.04e-01	81.8%	80.0%
5012473	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.62	52.0	4.78e-01	87.5%	70.0%
3601405	2006.1.4.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like	0.60	39.0	3.12e-01	78.4%	34.1%
3725165	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.57	50.0	4.00e-01	97.7%	73.1%