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hypothetical_protein

Euk-Vir

Rubus_yellow_net_virus

hypothetical_protein__YP_009116630__Rubus_yellow_net_virus__198310

Identity

Accession:
YP_009116630 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

70.7 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Rubus_yellow_net_virus

TaxID: 198310

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-95
PDB
Domain cluster: rep: hypothetical_protein__YP_009041480__Pagoda_yellow_mosaic_associated_virus__1505530__D4-91
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.71 53.0 5.17e-01 83.7% 70.6%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 50.0 5.42e-01 79.3% 88.5%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.66 45.0 4.61e-01 70.7% 73.0%
3a8tA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.64 50.0 4.76e-01 84.8% 80.2%
2ym9D00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.62 54.0 4.90e-01 95.7% 70.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 48.0 4.60e-01 82.6% 76.4%
1wdhA02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.59 35.0 3.38e-01 71.7% 52.9%
5dz2A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 42.0 2.92e-01 76.1% 46.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 3.41e-01 71.7% 87.7%
1xkrA00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.55 44.0 3.39e-01 84.8% 71.7%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.55 38.0 3.12e-01 71.7% 87.7%
4ivnA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 39.0 3.03e-01 80.4% 67.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4403218 3291.1.1.82 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING 0.72 59.0 5.63e-01 85.9% 75.2%
5072326 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.71 59.0 5.33e-01 92.4% 65.6%
3775068 604.1.1.24 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456 0.71 60.0 4.47e-01 90.2% 46.4%
4014326 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.70 39.0 3.34e-01 72.8% 35.2%
3686012 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.69 57.0 4.25e-01 85.9% 41.0%
4941837 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.64 40.0 3.60e-01 77.2% 44.6%
4026286 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 49.0 4.32e-01 88.0% 56.3%
3191895 601.16.1.10 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF7784 0.62 50.0 3.87e-01 85.9% 42.5%
3805763 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.62 45.0 3.82e-01 76.1% 51.3%
4026154 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.61 36.0 2.96e-01 73.9% 30.9%
3788006 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 2.80e-01 77.2% 22.6%
3270487 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 48.0 4.52e-01 87.0% 77.3%
3920598 109.4.1.2040 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOP1_C, TPR_DOP1, PF26706 0.59 44.0 2.60e-01 81.5% 31.3%
3298752 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.58 46.0 4.29e-01 84.8% 80.0%
3564419 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.57 49.0 3.75e-01 94.6% 59.0%
4884076 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 43.0 3.97e-01 81.5% 86.7%
3721449 7076.1.1.0 ↗ 0.57 41.0 4.24e-01 73.9% 100.0%
3398819 3226.1.1.2 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp 0.54 40.0 2.53e-01 85.9% 15.4%
3781132 3755.4.1.48 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › V_ATPase_I 0.53 46.0 3.86e-01 92.4% 56.7%
3292735 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.52 44.0 3.93e-01 95.7% 83.0%