←Back to structures

hypothetical_protein

Euk-Vir

Pseudoplusia_includens_SNPV_IE

hypothetical_protein__YP_009116978__Pseudoplusia_includens_SNPV_IE__1592335

Identity

Accession:: YP_009116978 ↗
Protein ID:: hypothetical_protein
Kingdom:: euk

Quality

63.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Pseudoplusia_includens_SNPV_IE

TaxID: 1592335

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-28_53-111

PDB

D2 medium residues 112-169

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25303.2 best	DUF7879	28.5	1.90e-06	100.0%	37.4%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dfgA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.73	56.0	5.99e-01	87.9%	100.0%
7ocsB01	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.68	58.0	4.11e-01	94.8%	33.5%
4a8eA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.67	56.0	5.05e-01	100.0%	77.0%
2klqA00	1.20.58.870	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	54.0	4.52e-01	100.0%	64.0%
2oxlA00	1.20.5.5260	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.64	54.0	5.33e-01	98.3%	100.0%
2x48A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.62	41.0	4.25e-01	75.9%	72.2%
1w0bA01	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.62	50.0	4.44e-01	96.6%	85.9%
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	49.0	5.01e-01	93.1%	98.2%
4a18Q01	1.10.10.1760	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36	0.58	49.0	4.67e-01	98.3%	85.5%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.58	46.0	3.69e-01	89.7%	70.0%
3deeA01	1.10.150.690	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063	0.56	45.0	4.01e-01	91.4%	65.1%
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	40.0	3.65e-01	77.6%	98.7%
3f4sA02	1.10.40.80	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 ›	0.53	41.0	4.01e-01	96.6%	78.1%
4qgpB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.52	43.0	3.64e-01	98.3%	78.5%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4482310	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.75	57.0	5.87e-01	93.1%	87.3%
5044192	2004.1.1.42 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE	0.75	65.0	3.83e-01	98.3%	26.7%
3588178	5067.1.1.22 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › 7TMR-HDED	0.72	63.0	4.63e-01	100.0%	83.2%
3786267	102.1.1.149 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF7078	0.71	61.0	5.31e-01	98.3%	82.2%
4567840	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.70	59.0	6.03e-01	94.8%	100.0%
5084042	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.70	59.0	5.42e-01	100.0%	82.5%
5024103	2003.1.5.19 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM	0.69	60.0	3.87e-01	100.0%	89.9%
4220256	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.68	59.0	4.87e-01	100.0%	59.1%
3487307	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.67	45.0	3.04e-01	70.7%	80.4%
3319319	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.65	51.0	4.93e-01	91.4%	82.9%
3989443	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.65	55.0	5.55e-01	96.6%	96.6%
4033612	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.64	49.0	5.11e-01	89.7%	100.0%
4145773	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.64	49.0	5.04e-01	89.7%	96.4%
4105244	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.64	52.0	5.17e-01	96.6%	95.0%
4489939	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.64	52.0	5.21e-01	96.6%	96.7%
3588595	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.60	48.0	4.87e-01	93.1%	98.2%
3993438	3552.1.1.0 ↗	alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain	0.57	44.0	4.07e-01	87.9%	68.8%
3592737	1134.1.1.0 ↗	alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain	0.55	41.0	4.06e-01	86.2%	83.1%
3236773	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.54	41.0	3.35e-01	93.1%	95.6%
5010901	4033.1.1.0 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like	0.53	43.0	3.74e-01	100.0%	71.4%
3707093	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	42.0	2.91e-01	91.4%	25.0%

D3 medium residues 170-222

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25303.2 best	DUF7879	27.7	3.20e-06	81.1%	27.2%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m2gA02	3.30.1600.10	Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain'	0.56	39.0	3.32e-01	75.5%	60.2%
2l9dA00	3.30.70.2340	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579	0.54	38.0	3.16e-01	79.2%	80.6%
3d8kD00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.52	40.0	2.61e-01	100.0%	43.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3960809	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.50	36.0	2.56e-01	81.1%	73.7%
4629506	4246.1.1.2 ↗	a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1	0.50	43.0	2.67e-01	98.1%	66.7%