←Back to structures

hypothetical_protein

Euk-Vir

Pseudoplusia_includens_SNPV_IE

hypothetical_protein__YP_009117026__Pseudoplusia_includens_SNPV_IE__1592335

Identity

Accession:
YP_009117026 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

75.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Pseudoplusia_includens_SNPV_IE

TaxID: 1592335

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
D2 medium residues 70-170
PDB
Domain cluster: rep: hypothetical_protein__YP_009336816__Hubei_hepe-like_virus_2__1922895__D3-75
Pfam (5)
AccessionNameScoreE-valueQ covHMM cov
PF13920.13 best zf-C3HC4_3 27.5 3.10e-06 54.5% 98.0%
PF14570.13 zf-RING_4 28.7 1.20e-06 48.5% 100.0%
PF13639.13 zf-RING_2 39.0 1.10e-09 46.5% 100.0%
PF13445.13 zf-RING_UBOX 25.9 1.10e-05 43.6% 100.0%
PF00097.32 zf-C3HC4 32.8 6.80e-08 43.6% 100.0%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ng2B00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.79 44.0 5.37e-01 77.2% 83.6%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.60 32.0 4.14e-01 84.2% 94.5%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 33.0 3.67e-01 87.1% 67.5%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 34.0 3.45e-01 73.3% 62.7%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.39e-01 92.1% 59.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 27.0 2.63e-01 88.1% 44.5%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 40.0 3.27e-01 88.1% 80.2%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 30.0 2.59e-01 75.2% 36.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3790610 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.92 58.0 7.30e-01 73.3% 100.0%
3596561 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.86 58.0 6.96e-01 71.3% 100.0%
3855040 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.86 60.0 6.78e-01 78.2% 91.3%
3273885 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.86 57.0 5.13e-01 71.3% 52.7%
3344003 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.83 60.0 6.74e-01 77.2% 93.8%
3818416 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.83 61.0 6.79e-01 75.2% 95.0%
3229025 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.80 58.0 6.71e-01 76.2% 100.0%
3478408 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.80 60.0 6.73e-01 78.2% 100.0%
3738043 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.79 59.0 6.12e-01 77.2% 96.8%
3459348 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.78 54.0 5.58e-01 91.1% 75.8%
3491906 376.1.1.66 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 0.76 55.0 6.28e-01 76.2% 100.0%
3814655 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.70 47.0 5.25e-01 88.1% 86.3%
3988065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 32.0 3.73e-01 82.2% 66.7%
3255441 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.62 48.0 4.42e-01 82.2% 70.5%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 28.0 3.38e-01 81.2% 65.6%
4178150 4071.1.1.1 ↗ beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.59 37.0 3.32e-01 83.2% 45.7%
3308663 601.3.1.11 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon 0.57 41.0 3.71e-01 76.2% 71.0%
3648747 376.1.3.62 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_Oberon 0.56 38.0 4.24e-01 70.3% 88.7%
4337170 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.54 47.0 2.87e-01 100.0% 65.6%
3705941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 29.0 3.20e-01 81.2% 63.7%
3526919 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.51 29.0 2.98e-01 99.0% 55.8%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 29.0 2.72e-01 97.0% 43.3%