←Back to structures

hypothetical_protein

Euk-Vir

Citrus_yellow_vein_clearing_virus

hypothetical_protein__YP_009124992__Citrus_yellow_vein_clearing_virus__1214459

Identity

Accession:: YP_009124992 ↗
Protein ID:: hypothetical_protein
Kingdom:: euk

Quality

65.3 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Alphaflexiviridae› Potexvirus› Citrus_yellow_vein_clearing_virus

TaxID: 1214459

Cluster

View cluster (87 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 141-240

PDB

Domain cluster: rep: coat_protein__NP_148784__Cactus_virus_X__112227__D45-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00286.26 best	Flexi_CP	109.8	1.40e-31	100.0%	70.3%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ahoB02	1.10.150.190	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2	0.61	42.0	4.40e-01	72.0%	86.8%
6rxaA01	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.60	43.0	4.59e-01	75.0%	92.0%
3um7A03	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	41.0	4.07e-01	81.0%	70.9%
8ctsB01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	41.0	4.30e-01	87.0%	85.1%
3uxuA00	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.57	48.0	4.18e-01	95.0%	83.6%
3ousA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	41.0	4.47e-01	87.0%	95.1%
4cgyA04	1.10.290.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4	0.55	39.0	3.64e-01	74.0%	94.4%
2a6hF01	1.20.120.1810	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.53	41.0	3.44e-01	85.0%	49.2%
3pqaB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.52	46.0	3.42e-01	100.0%	77.6%
3n01A00	3.30.70.2470	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain	0.51	38.0	4.04e-01	97.0%	90.8%
7odyC01	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.51	31.0	3.28e-01	81.0%	66.3%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1722663	3143.1.1.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP	0.93	89.0	6.60e-01	100.0%	45.6%
1818174	3143.1.1.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP	0.84	77.0	5.92e-01	100.0%	47.5%
2123187	3143.1.1.2 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat	0.76	69.0	5.58e-01	100.0%	55.9%
4335818	101.1.2.19 ↗	alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac	0.67	46.0	4.09e-01	71.0%	92.9%
4608282	2484.1.1.70 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA	0.65	51.0	3.40e-01	83.0%	32.7%
5038794	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.64	44.0	4.52e-01	71.0%	92.6%
3632120	592.1.1.0 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain	0.61	40.0	4.38e-01	77.0%	83.7%
3386281	3962.1.1.0 ↗	alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit	0.60	46.0	4.04e-01	85.0%	88.1%
5037060	2006.1.1.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase	0.59	48.0	3.77e-01	87.0%	64.3%
3707773	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.56	43.0	3.61e-01	82.0%	80.6%
None	—		0.55	40.0	3.83e-01	77.0%	89.2%
3900119	5050.1.1.2 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2	0.55	40.0	2.52e-01	75.0%	53.8%
3232315	101.1.10.1 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N	0.53	44.0	3.25e-01	93.0%	61.4%
5052501	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.53	38.0	3.85e-01	76.0%	86.0%
5023063	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.53	38.0	3.56e-01	83.0%	61.7%
3824122	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.52	45.0	3.20e-01	100.0%	73.0%
3729457	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.52	40.0	2.66e-01	83.0%	37.1%
4018516	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	38.0	3.00e-01	77.0%	84.3%
5041293	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	36.0	3.74e-01	71.0%	100.0%
4074186	4953.1.1.32 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › NA37	0.51	39.0	4.07e-01	85.0%	98.9%
2522080	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.51	39.0	3.76e-01	85.0%	70.4%
4106111	4009.1.1.11 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › NA37	0.51	39.0	4.05e-01	85.0%	98.9%
4221723	5050.1.1.25 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TLC	0.50	36.0	2.73e-01	76.0%	75.7%

D2 medium residues 241-308

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00286.26 best	Flexi_CP	37.8	2.40e-09	55.9%	29.0%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hbxA01	4.10.280.50	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B ›	0.58	38.0	4.12e-01	82.4%	83.3%
1j3wC00	3.30.450.30	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic	0.58	44.0	3.58e-01	83.8%	91.7%
2ebfX02	1.20.140.180	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.57	37.0	2.95e-01	100.0%	31.5%
2b5dX02	1.20.1430.10	Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain	0.56	45.0	3.76e-01	100.0%	50.9%
1ddbA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.51	45.0	3.27e-01	100.0%	77.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3184107	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.55	41.0	3.49e-01	83.8%	68.8%
5044326	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.52	43.0	2.74e-01	98.5%	38.0%
3611360	316.1.1.36 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central	0.51	40.0	2.87e-01	98.5%	29.2%
3856774	110.1.1.18 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1	0.51	38.0	2.95e-01	80.9%	62.7%