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hypothetical_protein

Euk-Vir

Lambdina_fiscellaria_nucleopolyhedrovirus

hypothetical_protein__YP_009133217__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929

Identity

Accession:
YP_009133217 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

64.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 213-298
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27725.1 best SfNPV_sf27 32.6 1.10e-07 96.5% 31.6%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 48.0 5.13e-01 89.5% 75.7%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.72 43.0 4.75e-01 84.9% 76.1%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 50.0 5.01e-01 89.5% 70.8%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 39.0 3.87e-01 100.0% 52.8%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 46.0 4.41e-01 89.5% 60.6%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 40.0 3.71e-01 100.0% 49.1%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 53.0 5.61e-01 100.0% 100.0%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 46.0 5.00e-01 88.4% 91.3%
2wp4B00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.65 51.0 4.46e-01 84.9% 87.1%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 39.0 3.21e-01 98.8% 34.7%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.63 45.0 4.88e-01 88.4% 90.3%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 50.0 5.15e-01 98.8% 98.8%
2eo5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 45.0 3.82e-01 95.3% 47.3%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.60 54.0 4.32e-01 100.0% 93.3%
3cgiA00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.59 54.0 4.92e-01 100.0% 78.6%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 46.0 4.87e-01 88.4% 94.8%
3gfhA01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.59 53.0 4.92e-01 100.0% 80.9%
1weyA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 46.0 4.34e-01 89.5% 69.2%
2x51A06 3.30.70.1590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 4.63e-01 84.9% 98.5%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.59 53.0 4.59e-01 100.0% 77.1%
2c5sA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.59 48.0 3.84e-01 89.5% 99.4%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 38.0 3.08e-01 100.0% 36.0%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 43.0 4.12e-01 89.5% 67.6%
4e9jB01 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 48.0 4.14e-01 91.9% 96.4%
2x7iA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.57 48.0 4.16e-01 89.5% 91.4%
2wp7A00 3.90.1720.30 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › PPPDE domains 0.57 49.0 4.14e-01 100.0% 72.8%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 42.0 4.64e-01 89.5% 100.0%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.46e-01 100.0% 50.4%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.57 38.0 4.31e-01 77.9% 98.3%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.57 48.0 4.87e-01 100.0% 98.8%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.85e-01 100.0% 86.2%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 4.21e-01 88.4% 85.9%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 41.0 3.12e-01 80.2% 89.5%
2pb2B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.82e-01 91.9% 64.1%
2ctlA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 41.0 3.99e-01 89.5% 73.2%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 41.0 4.28e-01 89.5% 89.9%
3bzmA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 45.0 2.94e-01 95.3% 38.7%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.85e-01 88.4% 55.3%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.28e-01 95.3% 90.8%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.86e-01 91.9% 63.8%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.38e-01 100.0% 54.7%
2gb3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 45.0 3.35e-01 97.7% 82.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.42e-01 97.7% 95.2%
4byfA01 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 41.0 4.08e-01 87.2% 82.2%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.24e-01 93.0% 93.8%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 42.0 4.23e-01 89.5% 100.0%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 40.0 3.76e-01 88.4% 69.0%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 40.0 4.06e-01 87.2% 89.5%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.44e-01 88.4% 63.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937548 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.79 50.0 6.07e-01 86.0% 100.0%
4033471 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.76 54.0 5.22e-01 89.5% 66.3%
4019157 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.72 51.0 4.72e-01 89.5% 58.3%
4940753 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.71 54.0 4.97e-01 98.8% 63.6%
4324589 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.70 46.0 5.12e-01 91.9% 89.2%
4153537 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.69 42.0 4.39e-01 89.5% 65.0%
5024282 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.69 50.0 4.45e-01 98.8% 52.8%
4622891 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.68 44.0 4.72e-01 89.5% 76.0%
408591 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.68 46.0 4.41e-01 89.5% 58.8%
2713319 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.68 46.0 5.19e-01 89.5% 92.3%
4400525 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.67 45.0 4.49e-01 89.5% 66.7%
4930866 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.66 49.0 5.17e-01 97.7% 90.7%
4453707 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 53.0 3.94e-01 100.0% 34.5%
4054900 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 53.0 4.35e-01 100.0% 49.7%
4599928 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 45.0 5.03e-01 88.4% 96.9%
5081186 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.64 47.0 4.94e-01 89.5% 88.0%
4954582 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.62 43.0 3.73e-01 87.2% 45.9%
4971513 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 43.0 4.63e-01 87.2% 88.6%
4940610 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.62 41.0 4.74e-01 84.9% 100.0%
4270095 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.61 42.0 4.49e-01 90.7% 87.1%
5046209 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 5.27e-01 100.0% 97.6%
3590852 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 38.0 3.72e-01 87.2% 57.9%
3789102 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.59 44.0 4.65e-01 98.8% 90.5%
4940097 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 39.0 4.21e-01 93.0% 81.4%
4999312 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.59 54.0 5.26e-01 100.0% 89.5%
4338672 306.1.1.1 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.58 41.0 4.08e-01 100.0% 70.0%
3678489 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 50.0 3.79e-01 95.3% 78.0%
3938910 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.57 42.0 4.37e-01 88.4% 83.7%
3271795 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 49.0 3.39e-01 95.3% 75.4%
3992397 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.56 43.0 4.50e-01 89.5% 88.7%
3873799 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.56 41.0 4.35e-01 89.5% 90.7%
5030828 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 46.0 3.33e-01 93.0% 70.3%
3202654 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.55 42.0 4.02e-01 98.8% 68.6%
3646906 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 45.0 4.37e-01 88.4% 82.1%
4248959 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.55 44.0 4.34e-01 91.9% 80.0%
None 0.54 45.0 2.66e-01 93.0% 85.5%
4618808 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 48.0 3.41e-01 100.0% 76.7%
None 0.54 44.0 4.34e-01 93.0% 85.6%
4201703 3860.1.1.131 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head 0.53 41.0 2.60e-01 86.0% 14.9%
3337318 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.35e-01 100.0% 49.3%
4595352 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 41.0 2.41e-01 86.0% 84.9%
3762475 3860.1.1.131 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head 0.52 42.0 2.61e-01 89.5% 14.4%
5000386 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.52 42.0 3.56e-01 93.0% 52.4%
4363149 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 41.0 2.38e-01 88.4% 72.8%
2765413 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 43.0 3.06e-01 93.0% 72.5%
3887397 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 42.0 2.60e-01 89.5% 15.0%
3510717 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 44.0 3.17e-01 96.5% 73.8%
3267948 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.36e-01 90.7% 68.6%
3893439 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.43e-01 94.2% 67.4%
None 0.51 42.0 2.43e-01 94.2% 68.2%
None 0.51 41.0 2.41e-01 90.7% 78.3%
3863024 3860.1.1.131 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head 0.51 42.0 2.46e-01 91.9% 81.1%
3579230 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.51 41.0 2.82e-01 89.5% 24.1%
None 0.51 41.0 2.36e-01 90.7% 61.5%
3289939 2003.1.2.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 42.0 3.07e-01 93.0% 70.0%
3774043 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.29e-01 89.5% 48.7%
3163610 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.51 39.0 2.69e-01 97.7% 21.1%
4538202 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.50 41.0 2.45e-01 90.7% 93.9%
None 0.50 41.0 2.44e-01 93.0% 84.5%
D2 medium residues 114-188
PDB
Domain cluster: representative