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hypothetical_protein

Euk-Vir

Lambdina_fiscellaria_nucleopolyhedrovirus

hypothetical_protein__YP_009133245__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929

Identity

Accession:
YP_009133245 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

51.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lambdina_fiscellaria_nucleopolyhedrovirus

TaxID: 1642929

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 520-576
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07282.19 best Cas12f1-like_TNB 36.6 5.50e-09 82.5% 56.7%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m6nA00 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.80 49.0 5.42e-01 75.4% 78.3%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 41.0 4.81e-01 78.9% 91.4%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.67 49.0 4.97e-01 80.7% 94.7%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 45.0 4.56e-01 80.7% 72.7%
2lxwA00 6.10.250.1730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 37.0 3.80e-01 98.2% 56.4%
1dl6A00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 38.0 3.87e-01 70.2% 58.6%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.60 39.0 3.79e-01 70.2% 59.7%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 37.0 2.84e-01 84.2% 26.5%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 44.0 3.69e-01 82.5% 60.6%
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 41.0 3.51e-01 80.7% 46.2%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 44.0 4.09e-01 82.5% 65.8%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 44.0 3.71e-01 89.5% 75.0%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.56 39.0 3.74e-01 75.4% 63.2%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.56 38.0 3.70e-01 75.4% 64.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.37e-01 84.2% 58.9%
1zbtA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.06e-01 82.5% 71.8%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.56 42.0 3.59e-01 86.0% 57.8%
1gqeA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.22e-01 86.0% 74.5%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 2.93e-01 87.7% 51.9%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.54 38.0 3.32e-01 86.0% 47.3%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 47.0 2.88e-01 100.0% 83.5%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 37.0 2.99e-01 73.7% 88.5%
2x65A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 44.0 2.72e-01 89.5% 68.9%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 44.0 3.47e-01 91.2% 44.5%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.37e-01 96.5% 97.2%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 32.0 3.65e-01 89.5% 100.0%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.65e-01 82.5% 31.3%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 43.0 3.13e-01 91.2% 44.1%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 38.0 3.31e-01 82.5% 59.0%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.12e-01 89.5% 97.2%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.51 41.0 2.72e-01 93.0% 45.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.55e-01 78.9% 80.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 37.0 3.37e-01 82.5% 81.9%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.51 37.0 2.72e-01 86.0% 77.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943069 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.93 75.0 5.44e-01 100.0% 35.0%
5011867 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.91 71.0 4.88e-01 96.5% 28.0%
5005094 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.81 64.0 4.33e-01 94.7% 24.6%
4991162 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.81 63.0 4.16e-01 98.2% 22.3%
5036301 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.80 54.0 6.18e-01 84.2% 100.0%
5073213 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.79 63.0 4.20e-01 100.0% 22.7%
3992738 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 45.0 5.03e-01 71.9% 73.3%
4929702 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 58.0 6.07e-01 94.7% 94.0%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.77 66.0 4.37e-01 96.5% 25.2%
3262963 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.76 48.0 4.90e-01 73.7% 65.5%
5043002 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.73 54.0 5.80e-01 91.2% 100.0%
3589899 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 53.0 5.73e-01 91.2% 97.8%
3412674 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 4.66e-01 86.0% 83.3%
5075345 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.69 52.0 5.50e-01 93.0% 94.0%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 58.0 5.11e-01 94.7% 76.5%
2800346 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 41.0 4.57e-01 71.9% 81.4%
3576759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 5.01e-01 87.7% 88.6%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.67 39.0 4.02e-01 98.2% 60.0%
1323679 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.66 41.0 4.59e-01 73.7% 87.8%
4026585 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 47.0 3.23e-01 80.7% 60.0%
3948249 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 42.0 2.77e-01 82.5% 14.9%
3974544 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 41.0 4.21e-01 82.5% 69.1%
2127008 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.63 41.0 3.36e-01 82.5% 33.3%
3716634 109.4.1.1357 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_16 0.62 50.0 3.09e-01 100.0% 15.2%
3333592 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 43.0 2.97e-01 73.7% 25.9%
3613928 375.1.1.137 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB_Zn-ribbon_Tryp 0.62 40.0 4.39e-01 70.2% 84.4%
4260807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 47.0 4.43e-01 84.2% 84.3%
3400447 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 44.0 2.93e-01 75.4% 25.1%
4336252 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 49.0 4.04e-01 89.5% 51.4%
4227538 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.61 40.0 4.05e-01 82.5% 69.1%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 38.0 4.10e-01 86.0% 77.8%
3980811 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.60 39.0 3.91e-01 82.5% 63.3%
4275625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.60 44.0 4.37e-01 87.7% 76.7%
4503505 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.60 52.0 4.14e-01 100.0% 67.5%
4525958 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 52.0 4.24e-01 100.0% 54.6%
4003736 3289.1.1.8 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Strumpellin 0.58 48.0 2.58e-01 93.0% 6.0%
1831655 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.56 35.0 3.44e-01 71.9% 55.7%
4648509 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.56 44.0 3.80e-01 84.2% 90.0%
4437923 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 2.70e-01 84.2% 18.4%
3995904 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.55 38.0 3.27e-01 75.4% 45.2%
3598119 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.55 39.0 3.74e-01 77.2% 68.6%
3292956 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.55 36.0 3.77e-01 70.2% 76.0%
4269649 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.54 44.0 3.62e-01 91.2% 49.1%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 4.01e-01 77.2% 86.0%
4056467 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 3.98e-01 84.2% 78.3%
3712065 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 45.0 4.33e-01 93.0% 87.7%
3926017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.94e-01 77.2% 80.0%
3403082 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.98e-01 93.0% 33.0%
4872108 2003.1.5.85 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 42.0 3.03e-01 96.5% 63.5%
1429956 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.52 37.0 3.63e-01 78.9% 72.3%
4055966 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.51 36.0 3.74e-01 80.7% 88.0%
3936595 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 33.0 3.31e-01 82.5% 63.3%
3924149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.80e-01 77.2% 88.0%
3365759 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 32.0 3.43e-01 86.0% 87.5%
4344723 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.50 38.0 2.31e-01 84.2% 13.6%
3861324 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.50 35.0 3.71e-01 75.4% 90.0%