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hypothetical_protein

Euk-Vir

Perigonia_lusca_single_nucleopolyhedrovirus

hypothetical_protein__YP_009165651__Perigonia_lusca_single_nucleopolyhedrovirus__1675865

Identity

Accession:
YP_009165651 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

75.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Perigonia_lusca_single_nucleopolyhedrovirus

TaxID: 1675865

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-75
PDB
Domain cluster: rep: hypothetical_protein_PsunGV_gp175__YP_003422514__Pseudalatia_unipuncta_granulovirus__36355__D13-66
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 46.0 2.85e-01 74.6% 30.5%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 49.0 3.85e-01 84.1% 48.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 3.83e-01 76.2% 53.1%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 49.0 3.63e-01 85.7% 78.4%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 46.0 2.77e-01 79.4% 28.3%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.80e-01 76.2% 36.4%
3icsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 49.0 3.50e-01 87.3% 82.6%
4eqsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 48.0 3.53e-01 87.3% 78.2%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 45.0 2.86e-01 82.5% 56.1%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.49e-01 85.7% 79.8%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 46.0 3.41e-01 84.1% 79.0%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.67e-01 74.6% 43.5%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 40.0 2.63e-01 76.2% 36.6%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.57 44.0 2.78e-01 84.1% 33.8%
2bc0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.26e-01 92.1% 87.6%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.57 40.0 3.13e-01 74.6% 70.1%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.59e-01 74.6% 32.0%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.81e-01 84.1% 72.8%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.82e-01 85.7% 50.8%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.97e-01 82.5% 88.7%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 40.0 2.70e-01 81.0% 58.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.40e-01 87.3% 84.5%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.55 43.0 3.36e-01 90.5% 88.6%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.93e-01 95.2% 96.5%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 41.0 3.99e-01 82.5% 83.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.54 40.0 3.47e-01 84.1% 73.5%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 45.0 3.04e-01 95.2% 91.4%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.46e-01 79.4% 58.3%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.53 44.0 2.82e-01 100.0% 93.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.60e-01 71.4% 93.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237859 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 46.0 4.95e-01 71.4% 70.9%
3328618 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.71 43.0 5.07e-01 71.4% 95.0%
3582536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 3.83e-01 79.4% 39.1%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.67 53.0 3.89e-01 85.7% 83.6%
3212056 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 4.27e-01 73.0% 91.3%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 3.67e-01 74.6% 44.8%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 46.0 3.79e-01 74.6% 47.3%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 42.0 4.03e-01 73.0% 57.3%
3816528 5.1.2.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.64 45.0 3.34e-01 74.6% 61.2%
4105328 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 45.0 4.54e-01 74.6% 83.1%
185622 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.63 49.0 3.81e-01 84.1% 46.3%
3259547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 3.64e-01 74.6% 44.3%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.63 44.0 4.31e-01 73.0% 79.4%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 49.0 4.33e-01 84.1% 82.2%
161180 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 48.0 3.91e-01 84.1% 87.6%
3406827 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 3.72e-01 90.5% 56.5%
3590194 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 49.0 3.42e-01 85.7% 81.0%
3601532 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 54.0 3.28e-01 100.0% 77.9%
1269798 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 47.0 3.78e-01 82.5% 84.1%
4013709 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.62 51.0 3.17e-01 90.5% 97.3%
3575199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.09e-01 84.1% 81.0%
None — 0.62 54.0 3.23e-01 100.0% 69.7%
3707400 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 54.0 3.23e-01 100.0% 79.4%
3273270 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 44.0 2.99e-01 77.8% 48.6%
3626691 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 47.0 4.08e-01 84.1% 81.0%
3699899 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.61 42.0 3.47e-01 73.0% 65.0%
3699623 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.61 44.0 3.69e-01 76.2% 76.2%
4334995 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.60 51.0 3.21e-01 93.7% 44.6%
5016027 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 3.75e-01 73.0% 64.4%
5045429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 3.59e-01 71.4% 68.4%
4943060 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.60 47.0 3.43e-01 85.7% 81.1%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 41.0 3.57e-01 73.0% 78.0%
1176785 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 3.98e-01 90.5% 88.2%
3639062 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 52.0 3.40e-01 96.8% 50.8%
4307428 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 49.0 3.49e-01 93.7% 83.6%
4117744 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.58 50.0 3.20e-01 95.2% 42.6%
3782601 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.58 45.0 3.62e-01 85.7% 75.4%
3253036 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.53e-01 85.7% 77.0%
3471065 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 50.0 3.08e-01 100.0% 71.3%
3383615 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 39.0 2.55e-01 71.4% 33.8%
3937159 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.57 50.0 3.01e-01 96.8% 79.6%
4058912 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 47.0 2.88e-01 93.7% 59.3%
340344 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 48.0 3.86e-01 92.1% 89.2%
4119319 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 48.0 2.87e-01 95.2% 56.8%
4246369 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 47.0 2.88e-01 95.2% 60.0%
3672445 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.45e-01 88.9% 89.0%
3246253 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 38.0 2.43e-01 73.0% 58.9%
3628870 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 47.0 3.90e-01 93.7% 76.4%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.54 48.0 3.93e-01 98.4% 66.1%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.64e-01 76.2% 75.7%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.51 38.0 3.49e-01 79.4% 65.9%
3703622 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.51 35.0 2.04e-01 77.8% 6.8%