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hypothetical_protein
Euk-VirPerigonia_lusca_single_nucleopolyhedrovirus
hypothetical_protein__YP_009165706__Perigonia_lusca_single_nucleopolyhedrovirus__1675865
Identity
- Accession:
- YP_009165706 ↗
- Protein ID:
- hypothetical_protein
- Kingdom:
- euk
Quality
70.1
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Perigonia_lusca_single_nucleopolyhedrovirus
TaxID: 1675865
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-68
D2
medium
residues 69-129
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cb8A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.68 | 50.0 | 2.93e-01 | 78.7% | 10.5% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 44.0 | 3.94e-01 | 75.4% | 54.5% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 47.0 | 4.56e-01 | 93.4% | 76.5% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 42.0 | 4.21e-01 | 73.8% | 82.3% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.60 | 49.0 | 4.46e-01 | 98.4% | 74.4% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 3.59e-01 | 96.7% | 47.6% |
| 4im7A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 43.0 | 3.07e-01 | 80.3% | 26.9% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 45.0 | 3.78e-01 | 91.8% | 72.9% |
| 1g0uE00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 46.0 | 3.22e-01 | 96.7% | 60.0% |
| 1sxjA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 40.0 | 3.84e-01 | 78.7% | 70.8% |
| 1wjzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 38.0 | 3.44e-01 | 75.4% | 56.4% |
| 1uhvA01 | 2.60.40.1500 | Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 | 0.54 | 38.0 | 2.93e-01 | 77.0% | 42.3% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 45.0 | 4.20e-01 | 98.4% | 75.9% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.54 | 45.0 | 3.79e-01 | 95.1% | 71.6% |
| 1a5kC02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 42.0 | 2.73e-01 | 100.0% | 67.7% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.51 | 38.0 | 3.20e-01 | 86.9% | 76.8% |
| 3dewA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 41.0 | 3.29e-01 | 96.7% | 90.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3879440 | 3720.1.1.1 ↗ | alpha bundles › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › RAMP | 0.70 | 52.0 | 4.46e-01 | 78.7% | 55.8% |
| 3256460 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.66 | 46.0 | 3.17e-01 | 73.8% | 22.9% |
| 5051879 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 43.0 | 4.03e-01 | 72.1% | 61.3% |
| 4010416 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 44.0 | 3.51e-01 | 75.4% | 40.0% |
| 3711600 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.62 | 42.0 | 3.81e-01 | 73.8% | 51.8% |
| 4071066 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.61 | 45.0 | 4.78e-01 | 83.6% | 100.0% |
| 3110288 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.61 | 42.0 | 4.01e-01 | 75.4% | 61.0% |
| 5059163 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.59 | 48.0 | 4.73e-01 | 95.1% | 95.4% |
| 1095885 | 6128.1.1.0 ↗ | 0.59 | 42.0 | 4.17e-01 | 77.0% | 76.2% | |
| 4045132 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.59 | 41.0 | 3.46e-01 | 75.4% | 48.2% |
| 4116779 | 603.1.1.174 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA | 0.57 | 39.0 | 3.80e-01 | 75.4% | 78.7% |
| 5001051 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.57 | 44.0 | 4.47e-01 | 91.8% | 91.7% |
| 4635229 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.55 | 44.0 | 4.01e-01 | 95.1% | 77.8% |
| 4017306 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.53 | 43.0 | 4.00e-01 | 93.4% | 82.5% |
| 3934834 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.53 | 42.0 | 3.16e-01 | 93.4% | 33.0% |
| 3394055 | 7579.1.1.21 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Ndr | 0.52 | 42.0 | 2.77e-01 | 96.7% | 85.2% |