hypothetical_protein

Euk-Vir

Blackberry_virus_F

hypothetical_protein__YP_009229917__Blackberry_virus_F__2560349

Identity

78.4 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Blackberry_virus_F

TaxID: 2560349

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-131

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ziyA01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.70	53.0	4.58e-01	78.3%	90.7%
6xj1A01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.68	52.0	4.05e-01	82.9%	40.8%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.68	46.0	3.78e-01	88.4%	38.0%
7utzR02	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.63	40.0	3.09e-01	79.8%	29.7%
7wu7501	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	43.0	4.39e-01	75.2%	90.5%
1s12A00	3.30.70.1490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp	0.58	28.0	3.21e-01	76.0%	61.7%
1lvlA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.56	28.0	2.38e-01	96.1%	28.1%
3spcA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	37.0	3.77e-01	71.3%	88.2%
3k29A00	1.10.287.1700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	47.0	4.35e-01	96.9%	98.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4984959	3758.1.1.113 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook	0.71	50.0	3.64e-01	72.9%	53.6%
3252533	4177.1.1.8 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3	0.67	55.0	4.67e-01	100.0%	53.0%
3600865	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.67	50.0	4.49e-01	76.7%	60.0%
4887090	3834.1.1.1 ↗	alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA_TcB_BD	0.59	49.0	3.61e-01	93.8%	33.3%
3287147	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.57	46.0	4.25e-01	89.1%	65.9%