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hypothetical_protein
Euk-VirUrbanus_proteus_nucleopolyhedrovirus
hypothetical_protein__YP_009250017__Urbanus_proteus_nucleopolyhedrovirus__1675866
Identity
- Accession:
- YP_009250017 ↗
- Protein ID:
- hypothetical_protein
- Kingdom:
- euk
Quality
81.9
mean pLDDT
Taxonomy
TaxID: 1675866
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-53
Domain cluster:
rep: ORF111__YP_010087112__Spodoptera_eridania_nucleopolyhedrovirus__2315721__D3-63
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11077.15 best | DUF2616 | 35.0 | 1.80e-08 | 100.0% | 34.3% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uqwA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.75 | 55.0 | 3.58e-01 | 78.4% | 26.7% |
| 6gc1A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.71 | 61.0 | 4.16e-01 | 100.0% | 91.1% |
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.71 | 56.0 | 3.71e-01 | 88.2% | 57.1% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.71 | 49.0 | 5.10e-01 | 72.5% | 87.2% |
| 1dd9A03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.70 | 50.0 | 4.85e-01 | 100.0% | 66.1% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.68 | 47.0 | 4.83e-01 | 74.5% | 86.0% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 48.0 | 4.60e-01 | 70.6% | 63.8% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.67 | 46.0 | 2.83e-01 | 70.6% | 62.0% |
| 3e98B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 56.0 | 3.83e-01 | 96.1% | 75.9% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 55.0 | 4.34e-01 | 98.0% | 94.5% |
| 4aidA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.65 | 53.0 | 4.65e-01 | 96.1% | 81.7% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 48.0 | 3.68e-01 | 90.2% | 76.9% |
| 1rljA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.61 | 41.0 | 3.03e-01 | 70.6% | 45.2% |
| 5unhA02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 47.0 | 3.06e-01 | 90.2% | 84.7% |
| 5cy5B00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.59 | 47.0 | 3.60e-01 | 100.0% | 72.5% |
| 4o92A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 50.0 | 4.04e-01 | 100.0% | 68.6% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 52.0 | 3.73e-01 | 98.0% | 50.0% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.58 | 43.0 | 3.54e-01 | 84.3% | 63.5% |
| 1ka8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 3.47e-01 | 88.2% | 98.0% |
| 3k50A03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 46.0 | 3.23e-01 | 100.0% | 70.8% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 40.0 | 2.76e-01 | 84.3% | 91.6% |
| 3vkgA18 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.52 | 42.0 | 3.02e-01 | 96.1% | 75.7% |
| 2bi7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 2.97e-01 | 100.0% | 32.8% |
| 4ei7A02 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.50 | 41.0 | 2.77e-01 | 98.0% | 60.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945812 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.81 | 58.0 | 3.98e-01 | 74.5% | 29.4% |
| 3879987 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.79 | 56.0 | 5.15e-01 | 74.5% | 69.2% |
| 3909630 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.76 | 56.0 | 4.86e-01 | 76.5% | 60.0% |
| 4943968 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.76 | 55.0 | 3.91e-01 | 74.5% | 28.3% |
| 3531615 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.74 | 55.0 | 5.18e-01 | 76.5% | 75.0% |
| 3710888 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.74 | 58.0 | 4.30e-01 | 86.3% | 46.2% |
| 4667226 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.73 | 60.0 | 3.82e-01 | 90.2% | 49.8% |
| 3502139 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 53.0 | 3.60e-01 | 76.5% | 23.3% |
| None | — | 0.71 | 57.0 | 3.76e-01 | 100.0% | 21.4% | |
| 3718917 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.69 | 47.0 | 4.17e-01 | 70.6% | 58.7% |
| 3363496 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.69 | 55.0 | 4.70e-01 | 94.1% | 54.1% |
| 4931233 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.68 | 46.0 | 3.38e-01 | 72.5% | 75.9% |
| 4996751 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.67 | 52.0 | 4.14e-01 | 86.3% | 73.3% |
| 3730200 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 47.0 | 3.48e-01 | 76.5% | 74.6% |
| 347579 | 223.1.1.9 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF484 | 0.65 | 56.0 | 3.83e-01 | 96.1% | 75.9% |
| 4150540 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 54.0 | 4.63e-01 | 96.1% | 76.5% |
| 3591850 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.64 | 49.0 | 4.59e-01 | 92.2% | 66.2% |
| None | — | 0.62 | 53.0 | 3.31e-01 | 100.0% | 57.0% | |
| None | — | 0.62 | 53.0 | 3.30e-01 | 100.0% | 56.1% | |
| 4594071 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 50.0 | 4.35e-01 | 96.1% | 78.8% |
| 2494216 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.58 | 49.0 | 3.40e-01 | 96.1% | 100.0% |
| 3385823 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 48.0 | 3.75e-01 | 100.0% | 91.3% |
| 3396990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.80e-01 | 100.0% | 80.0% |
| 3465959 | 601.19.1.28 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › V_ATPase_I | 0.52 | 43.0 | 2.67e-01 | 98.0% | 70.0% |
| 3784212 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.38e-01 | 100.0% | 54.3% |
| 5051542 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 34.0 | 2.40e-01 | 70.6% | 20.0% |
D2
high
residues 74-157
Domain cluster:
rep: hypothetical_protein_AHEV_050__YP_008003873__Adoxophyes_honmai_entomopoxvirus_L__1293540__D1-84
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11077.15 best | DUF2616 | 48.3 | 1.50e-12 | 100.0% | 43.8% |