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hypothetical_protein

Euk-Vir

Urbanus_proteus_nucleopolyhedrovirus

hypothetical_protein__YP_009250100__Urbanus_proteus_nucleopolyhedrovirus__1675866

Identity

Accession:
YP_009250100 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

79.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 110-188
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 53.0 5.32e-01 91.1% 78.0%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.67 42.0 4.53e-01 87.3% 74.6%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 51.0 4.70e-01 91.1% 63.5%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.64 46.0 4.47e-01 87.3% 67.4%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.63 51.0 4.29e-01 87.3% 75.8%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 52.0 5.39e-01 97.5% 98.6%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 55.0 4.35e-01 100.0% 99.4%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.62 52.0 3.78e-01 92.4% 85.9%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 37.0 3.55e-01 100.0% 52.7%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 53.0 5.27e-01 98.7% 98.8%
2x51A06 3.30.70.1590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 46.0 4.95e-01 84.8% 98.5%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 49.0 4.95e-01 98.7% 91.1%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 48.0 3.60e-01 91.1% 83.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 42.0 3.98e-01 75.9% 97.9%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.58 49.0 4.89e-01 98.7% 100.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 41.0 3.94e-01 75.9% 100.0%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.57 47.0 4.76e-01 91.1% 98.7%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.57 49.0 4.45e-01 94.9% 74.5%
4xeaA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 47.0 3.61e-01 93.7% 51.6%
8bixC01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 49.0 3.45e-01 97.5% 85.1%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.43e-01 92.4% 90.9%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 44.0 4.30e-01 89.9% 91.9%
1a48A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.61e-01 79.7% 99.1%
2xhyD00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 42.0 2.70e-01 89.9% 92.5%
4byfA01 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 42.0 4.13e-01 89.9% 82.2%
2p8tA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.53 46.0 4.16e-01 97.5% 98.2%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.63e-01 86.1% 65.6%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.53 44.0 3.61e-01 94.9% 84.9%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 4.01e-01 84.8% 86.3%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.53 39.0 4.01e-01 97.5% 82.1%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.36e-01 96.2% 89.3%
3blvC00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 42.0 2.77e-01 86.1% 88.6%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 38.0 3.79e-01 91.1% 74.1%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 4.28e-01 88.6% 96.1%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.12e-01 92.4% 78.9%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 42.0 3.82e-01 91.1% 67.3%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.52 36.0 2.90e-01 72.2% 65.3%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 4.03e-01 84.8% 90.0%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.39e-01 98.7% 92.5%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.10e-01 77.2% 84.3%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.55e-01 79.7% 68.7%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.98e-01 86.1% 95.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 4.05e-01 89.9% 88.5%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 4.37e-01 100.0% 95.1%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.70e-01 86.1% 76.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.07e-01 91.1% 93.9%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.03e-01 91.1% 87.1%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.51 39.0 2.88e-01 83.5% 93.8%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.89e-01 96.2% 84.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033471 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.73 56.0 5.29e-01 91.1% 68.4%
5060568 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.69 45.0 4.99e-01 87.3% 86.7%
4561991 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 53.0 5.73e-01 91.1% 100.0%
4946371 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.68 54.0 4.97e-01 92.4% 67.0%
4940610 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.67 48.0 5.36e-01 84.8% 100.0%
4599928 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 49.0 5.28e-01 87.3% 95.4%
4422689 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.65 45.0 4.64e-01 87.3% 76.0%
3894383 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.65 44.0 4.98e-01 82.3% 100.0%
3938408 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 51.0 3.53e-01 91.1% 83.2%
5046209 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 5.36e-01 100.0% 100.0%
4453707 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 54.0 3.93e-01 100.0% 35.5%
5027879 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.62 49.0 5.08e-01 87.3% 97.3%
3954581 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.61 40.0 4.33e-01 88.6% 81.5%
3315278 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 50.0 4.28e-01 88.6% 60.8%
3173839 327.11.2.75 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29983 0.61 49.0 4.99e-01 91.1% 90.7%
4089899 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.61 49.0 5.08e-01 91.1% 93.3%
4954582 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.59 44.0 3.77e-01 89.9% 47.4%
3986601 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.59 44.0 4.43e-01 94.9% 80.0%
3927736 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 51.0 3.65e-01 97.5% 77.1%
4978365 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 42.0 4.21e-01 86.1% 75.0%
4940097 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 40.0 4.22e-01 89.9% 81.4%
3911302 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 44.0 4.73e-01 88.6% 100.0%
3295157 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 50.0 3.43e-01 97.5% 77.1%
4979800 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 47.0 3.21e-01 92.4% 74.0%
3884605 219.1.1.80 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4796_C 0.57 48.0 4.22e-01 96.2% 88.7%
3939861 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 46.0 4.04e-01 91.1% 67.5%
3798134 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 45.0 4.36e-01 91.1% 78.9%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.35e-01 94.9% 95.8%
3926536 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 47.0 3.33e-01 97.5% 76.2%
3984604 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.54 43.0 4.15e-01 91.1% 86.3%
3284560 3016.1.1.19 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C 0.54 45.0 4.34e-01 93.7% 93.3%
3627133 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 43.0 3.33e-01 89.9% 41.1%
4094061 101.1.9.98 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.53 40.0 3.96e-01 92.4% 75.3%
3939429 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.53 43.0 2.58e-01 92.4% 41.1%
3738490 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 45.0 3.98e-01 94.9% 100.0%
4997864 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.61e-01 94.9% 60.6%
4957247 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 37.0 3.49e-01 87.3% 58.1%
3390907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.16e-01 91.1% 86.9%
3165017 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.52 43.0 4.20e-01 94.9% 83.3%
3518473 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.50e-01 92.4% 92.8%
1175670 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.51 40.0 4.01e-01 89.9% 86.3%
3930235 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 41.0 2.93e-01 92.4% 49.1%
3590189 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.50 36.0 2.90e-01 75.9% 61.3%
3505170 3105.1.1.0 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related 0.50 42.0 3.38e-01 97.5% 73.1%
3289373 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.50 41.0 3.42e-01 92.4% 91.7%
D2 medium residues 47-104
PDB
Domain cluster: representative