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hypothetical_protein

Euk-Vir

Beihai_noda-like_virus_18

hypothetical_protein__YP_009329958__Beihai_noda-like_virus_18__1922471

Identity

Accession:: YP_009329958 ↗
Protein ID:: hypothetical_protein
Kingdom:: euk

Quality

69.3 mean pLDDT

Taxonomy

Beihai_noda-like_virus_18

TaxID: 1922471

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-77

PDB

D2 medium residues 166-200_231-308

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19222.6 best	Noda_Vmethyltr	39.1	8.60e-10	32.7%	23.6%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3p04A00	3.30.110.150	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein	0.65	42.0	4.98e-01	82.3%	96.1%
2c7rA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.60	46.0	3.76e-01	82.3%	50.2%
6fdfA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.59	46.0	3.81e-01	82.3%	53.3%
2p35A01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	44.0	3.82e-01	83.2%	51.7%
3m86A00	2.60.40.2020	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.56	41.0	4.20e-01	100.0%	78.4%
3rtyB01	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.53	37.0	3.85e-01	84.1%	75.2%
5swiD01	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.52	43.0	3.40e-01	91.2%	77.9%
3pt9A02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	40.0	3.01e-01	84.1%	60.0%
4i5sA02	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.50	38.0	4.09e-01	81.4%	100.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5050618	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.59	39.0	3.69e-01	96.5%	54.3%
4564083	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.59	43.0	3.38e-01	77.0%	42.9%
3244272	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	43.0	4.30e-01	87.6%	95.7%
3922452	244.1.1.17 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › RAE1_2_domI_C	0.53	36.0	3.59e-01	98.2%	67.8%
3731356	223.1.1.13 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3	0.53	41.0	3.93e-01	83.2%	91.9%
3600849	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.53	34.0	3.20e-01	94.7%	49.3%
3594386	331.3.1.0 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like	0.52	34.0	3.63e-01	82.3%	76.8%
3495172	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	42.0	3.81e-01	94.7%	61.8%
3717061	304.107.1.5 ↗	a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N	0.52	35.0	3.57e-01	82.3%	69.6%
3276203	223.1.1.13 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3	0.51	40.0	3.84e-01	82.3%	83.1%
3787358	708.1.1.6 ↗	beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › Gti1_Pac2	0.51	39.0	3.54e-01	85.0%	80.6%
3332191	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	41.0	3.53e-01	89.4%	67.6%
4010912	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.50	39.0	3.77e-01	83.2%	90.0%
4030001	5.1.4.621 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid	0.50	42.0	2.65e-01	94.7%	93.4%
3781073	223.2.1.29 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11	0.50	43.0	4.02e-01	92.9%	77.9%
3252646	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.50	38.0	3.58e-01	81.4%	88.6%
3599587	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	41.0	3.57e-01	92.0%	61.1%

D3 medium residues 201-230_309-395

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ld5A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.65	34.0	4.28e-01	73.5%	86.6%
2it9A00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.61	43.0	4.35e-01	73.5%	95.8%
3cm1A00	2.30.31.20	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB	0.54	38.0	3.66e-01	72.6%	72.8%
8eg0B01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.50	44.0	3.21e-01	98.3%	82.9%
4csdB00	2.120.10.70	Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin	0.50	42.0	3.26e-01	91.5%	82.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3589620	4312.1.1.11 ↗	a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin	0.58	32.0	3.67e-01	75.2%	71.1%
5001101	7089.1.1.0 ↗	a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD	0.57	28.0	3.78e-01	71.8%	90.0%
3603731	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.57	40.0	3.87e-01	74.4%	91.4%
3582457	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.55	46.0	3.34e-01	92.3%	70.6%
4224260	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	36.0	3.95e-01	86.3%	84.2%
4544637	4312.1.1.3 ↗	a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin	0.52	33.0	3.70e-01	70.1%	81.7%
3561513	5.1.4.8 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH	0.51	39.0	2.77e-01	81.2%	60.1%
3773287	5.1.3.202 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CNH	0.51	38.0	2.82e-01	80.3%	45.7%
3701944	331.17.1.1 ↗	a+b two layers › TBP-like › Atp11 › Atp11 › ATP11	0.51	35.0	3.07e-01	82.1%	47.4%
3783790	220.1.1.69 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114	0.51	36.0	3.60e-01	73.5%	87.5%
3672432	109.46.1.11 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_IFT122_1st	0.50	40.0	2.73e-01	87.2%	38.9%
4148941	220.1.1.44 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N	0.50	35.0	3.67e-01	71.8%	81.0%
3566475	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.50	41.0	3.18e-01	90.6%	67.1%

D4 medium residues 396-462

PDB

D5 medium residues 523-564_610-660

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337425__Wenzhou_bivalvia_virus_3__1923555__D646-677_755-792

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ra1A03	1.20.58.770	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	28.0	3.37e-01	91.4%	71.4%
2f48A03	1.10.10.480	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3	0.56	36.0	3.94e-01	76.3%	81.3%
2r0rB00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.52	37.0	3.96e-01	75.3%	97.4%
3hwcA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.51	36.0	2.83e-01	75.3%	69.5%
2nwbA02	1.20.58.480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	39.0	2.99e-01	86.0%	85.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3470819	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.61	43.0	4.38e-01	72.0%	92.2%
3921728	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.54	43.0	4.08e-01	87.1%	82.6%

D6 medium residues 565-609_661-750

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D7 medium residues 751-884

PDB

Domain cluster: rep: hypothetical_protein__YP_009337806__Shuangao_insect_virus_11__1923467__D743-868