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hypothetical_protein

Euk-Vir

Beihai_sobemo-like_virus_24

hypothetical_protein__YP_009329981__Beihai_sobemo-like_virus_24__1922696

Identity

Accession:
YP_009329981 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

85.9 mean pLDDT

Taxonomy

Beihai_sobemo-like_virus_24

TaxID: 1922696

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 290-344
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.77 59.0 4.69e-01 85.5% 47.0%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 59.0 5.29e-01 87.3% 62.8%
2yhcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 60.0 4.06e-01 90.9% 32.5%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 56.0 5.10e-01 83.6% 85.3%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 58.0 4.52e-01 89.1% 47.6%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 51.0 4.94e-01 74.5% 80.6%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.72 62.0 4.76e-01 100.0% 57.6%
1nkvB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.72 52.0 3.43e-01 78.2% 89.6%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 56.0 4.82e-01 87.3% 61.1%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 54.0 4.94e-01 85.5% 86.7%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.71 48.0 3.66e-01 70.9% 77.2%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 54.0 5.35e-01 87.3% 86.4%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 4.55e-01 83.6% 74.1%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 56.0 3.71e-01 96.4% 30.7%
3zheD01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 55.0 3.76e-01 90.9% 29.3%
8g0lB01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 54.0 3.33e-01 96.4% 27.4%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.66 51.0 4.51e-01 89.1% 77.6%
1t3dA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.62 42.0 3.27e-01 72.7% 69.3%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 47.0 3.96e-01 87.3% 61.0%
5ez1A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 48.0 3.98e-01 87.3% 90.0%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.60 47.0 3.98e-01 89.1% 75.3%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 39.0 3.40e-01 81.8% 51.5%
6mcjA00 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.54 44.0 3.35e-01 96.4% 69.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3530477 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 67.0 4.65e-01 96.4% 38.3%
3389960 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 59.0 5.11e-01 83.6% 76.5%
5000635 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 65.0 4.01e-01 100.0% 28.9%
3669 633.16.1.1 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › MLD 0.75 59.0 4.95e-01 89.1% 63.3%
3969866 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 59.0 3.90e-01 89.1% 24.7%
2393375 633.16.1.1 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › MLD 0.73 58.0 5.18e-01 89.1% 76.2%
5069407 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.73 55.0 4.99e-01 81.8% 64.0%
400738 109.4.1.206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO 0.73 58.0 4.52e-01 89.1% 47.6%
3608246 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 57.0 5.75e-01 87.3% 94.5%
4952196 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.73 50.0 3.28e-01 72.7% 92.3%
None — 0.72 59.0 4.00e-01 92.7% 94.8%
165995 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 54.0 4.94e-01 85.5% 86.7%
3948672 639.2.1.1 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.70 51.0 5.14e-01 78.2% 90.9%
3647425 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.70 56.0 3.89e-01 92.7% 29.5%
3812743 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.70 59.0 4.45e-01 98.2% 43.6%
5032368 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 49.0 4.73e-01 78.2% 93.8%
4023163 109.4.1.163 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N 0.69 58.0 3.61e-01 100.0% 35.3%
1657777 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.69 54.0 3.57e-01 90.9% 24.2%
1148735 109.4.1.1919 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16, YfiO 0.69 56.0 3.71e-01 96.4% 30.7%
4929706 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 50.0 4.73e-01 81.8% 88.6%
2825526 109.4.1.1300 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19 0.68 52.0 4.71e-01 85.5% 80.5%
4982070 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.68 47.0 3.09e-01 72.7% 90.8%
2573754 189.1.1.1 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RasGAP 0.67 56.0 4.92e-01 98.2% 88.6%
3975480 109.4.1.922 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_9 0.67 54.0 4.19e-01 92.7% 71.3%
5051840 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.65 51.0 4.53e-01 89.1% 62.4%
4534092 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 3.85e-01 100.0% 55.0%
3185350 109.4.1.414 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N 0.64 52.0 3.41e-01 96.4% 35.8%
3501795 548.1.1.2 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRAB 0.64 47.0 4.87e-01 90.9% 88.0%
2875705 109.4.1.1306 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11 0.63 52.0 4.51e-01 98.2% 65.2%
3628153 109.4.1.517 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med24_N 0.63 51.0 3.45e-01 96.4% 34.3%
3727188 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 3.86e-01 96.4% 64.3%
3203288 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.39e-01 87.3% 95.7%
4061283 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.61 44.0 4.55e-01 80.0% 90.0%
5022532 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.48e-01 78.2% 69.3%
D2 medium residues 1-85
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337735__Wenling_sobemo-like_virus_2__1923541__D4-91_185-200
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 32.0 2.63e-01 74.1% 29.1%
3u4qA02 1.10.274.50 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.56 41.0 3.44e-01 77.6% 65.3%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 39.0 3.85e-01 74.1% 85.4%
6n8eA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 38.0 2.95e-01 72.9% 77.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589795 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.68 46.0 4.33e-01 81.2% 58.0%
3965787 304.8.1.53 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.53 43.0 3.54e-01 87.1% 70.0%
D3 medium residues 86-153_206-289
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181