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hypothetical_protein

Euk-Vir

Hubei_noda-like_virus_17

hypothetical_protein__YP_009330099__Hubei_noda-like_virus_17__1922972

Identity

Accession:
YP_009330099 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

70.0 mean pLDDT

Taxonomy

Hubei_noda-like_virus_17

TaxID: 1922972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 710-835
PDB
Domain cluster: rep: hypothetical_protein__YP_009337806__Shuangao_insect_virus_11__1923467__D743-868
D2 medium residues 46-118
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19222.6 best Noda_Vmethyltr 54.9 1.10e-14 76.7% 36.5%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 52.0 3.70e-01 95.9% 51.5%
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 46.0 3.29e-01 86.3% 51.2%
1g6cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 47.0 3.27e-01 89.0% 31.4%
2kg4A00 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.55 39.0 3.01e-01 75.3% 90.9%
1eq2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 3.41e-01 95.9% 93.1%
3ibvB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 43.0 2.38e-01 83.6% 12.7%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 43.0 3.59e-01 90.4% 51.5%
4w7wA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 44.0 2.87e-01 90.4% 33.2%
2c53A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.53 42.0 3.07e-01 91.8% 81.1%
3sxpA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 3.41e-01 100.0% 92.8%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 41.0 3.47e-01 90.4% 69.6%
3o63A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 42.0 3.04e-01 89.0% 36.0%
4pmoA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 40.0 2.97e-01 86.3% 43.1%
3crvA02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.52 40.0 3.50e-01 82.2% 83.3%
1xi3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 42.0 3.07e-01 93.2% 32.2%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 45.0 3.08e-01 95.9% 39.9%
3f2bA08 1.10.150.870 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 38.0 3.07e-01 78.1% 50.4%
6cblD01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 42.0 3.02e-01 90.4% 35.9%
6l25A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 44.0 3.00e-01 94.5% 42.0%
2wp8J01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 41.0 3.15e-01 90.4% 84.0%
1gw1A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 44.0 2.83e-01 100.0% 48.3%
1vr6A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 40.0 2.73e-01 86.3% 29.9%
6nbrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 44.0 2.93e-01 100.0% 68.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019444 2006.1.2.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.64 51.0 3.54e-01 90.4% 62.9%
3925129 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.59 41.0 3.75e-01 72.6% 72.6%
8717 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.56 47.0 3.25e-01 89.0% 31.4%
3166313 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.55 45.0 3.18e-01 89.0% 32.4%
134274 301.1.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae 0.55 39.0 3.01e-01 75.3% 90.9%
3164272 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.55 45.0 3.63e-01 93.2% 49.3%
3615868 2003.1.5.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 0.52 43.0 3.08e-01 90.4% 34.3%
3474799 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 3.30e-01 100.0% 81.4%
5060047 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.51 43.0 3.47e-01 95.9% 52.9%
3428729 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.51 42.0 3.33e-01 94.5% 94.5%
5035738 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.51 44.0 3.03e-01 100.0% 46.1%
4964892 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.51 40.0 3.37e-01 90.4% 52.1%
4987976 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.51 40.0 2.95e-01 86.3% 49.0%
1145757 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.50 40.0 2.61e-01 87.7% 86.0%
D3 medium residues 119-274
PDB
Domain cluster: rep: hypothetical_protein_AACVs1_gp2__YP_009011226__Anopheline-associated_C_virus_Viruses.__X__D149-168_223-340
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19222.6 best Noda_Vmethyltr 117.5 6.00e-34 58.3% 60.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425342 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 26.0 3.65e-01 89.1% 100.0%
D4 medium residues 275-386
PDB
D5 medium residues 387-526_559-623
PDB
Domain cluster: rep: hypothetical_protein__YP_009336545__Beihai_sphaeromadae_virus_2__1922708__D440-558_579-635
D6 medium residues 527-558_624-708
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181