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hypothetical_protein

Euk-Vir

Beihai_sobemo-like_virus_19

hypothetical_protein__YP_009336665__Beihai_sobemo-like_virus_19__1922690

Identity

Accession:
YP_009336665 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

44.1 mean pLDDT

Taxonomy

Beihai_sobemo-like_virus_19

TaxID: 1922690

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-152
PDB
D2 medium residues 162-178_268-356
PDB
Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.89 55.0 6.69e-01 75.5% 93.1%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.86 75.0 7.74e-01 92.5% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 77.0 7.51e-01 97.2% 93.9%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 71.0 7.18e-01 88.7% 100.0%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.83 57.0 6.73e-01 79.2% 100.0%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 70.0 6.76e-01 90.6% 100.0%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 68.0 6.57e-01 88.7% 100.0%
2rdlA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 68.0 6.54e-01 88.7% 100.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 68.0 7.01e-01 92.5% 94.1%
1azzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 67.0 6.47e-01 88.7% 100.0%
1a7sA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 67.0 6.63e-01 88.7% 100.0%
3fzzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 67.0 6.43e-01 88.7% 100.0%
3s9cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 67.0 6.42e-01 88.7% 100.0%
3h7tB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 65.0 6.22e-01 86.8% 100.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 59.0 5.89e-01 77.4% 96.3%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.78 66.0 5.32e-01 90.6% 93.9%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.78 62.0 5.07e-01 83.0% 96.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 58.0 6.04e-01 78.3% 96.0%
1gvzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 63.0 6.06e-01 88.7% 100.0%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 57.0 6.01e-01 78.3% 96.8%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 57.0 5.80e-01 83.0% 96.2%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 53.0 4.96e-01 76.4% 96.9%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 50.0 4.81e-01 72.6% 93.5%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 53.0 4.85e-01 78.3% 91.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 51.0 4.58e-01 74.5% 91.8%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 55.0 5.83e-01 81.1% 98.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 51.0 4.80e-01 74.5% 95.2%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.69 49.0 4.89e-01 72.6% 85.3%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 50.0 4.36e-01 75.5% 98.1%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 47.0 4.65e-01 72.6% 81.1%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 4.38e-01 72.6% 81.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 31.0 3.77e-01 77.4% 82.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 42.0 3.41e-01 92.5% 69.2%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.50 37.0 4.07e-01 78.3% 100.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 32.0 3.33e-01 71.7% 69.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.86 78.0 6.01e-01 96.2% 96.7%
None — 0.85 78.0 6.07e-01 97.2% 96.7%
2526961 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.85 80.0 6.10e-01 99.1% 95.5%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.85 78.0 6.03e-01 97.2% 96.8%
None — 0.85 79.0 6.06e-01 98.1% 96.8%
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 73.0 5.84e-01 90.6% 100.0%
3464880 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.83 72.0 5.53e-01 90.6% 90.7%
2710030 1.1.5.12 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39 0.83 77.0 6.13e-01 97.2% 100.0%
3400042 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 73.0 5.52e-01 93.4% 97.0%
4028467 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.83 69.0 4.97e-01 87.7% 73.1%
3403377 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 72.0 5.30e-01 91.5% 91.2%
3969197 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.83 75.0 5.44e-01 96.2% 98.5%
3452728 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.82 70.0 5.49e-01 89.6% 97.6%
4387060 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.82 74.0 5.70e-01 95.3% 94.4%
None — 0.82 73.0 5.73e-01 95.3% 96.7%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 69.0 5.49e-01 88.7% 50.3%
4205419 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.81 74.0 5.64e-01 97.2% 97.4%
4031177 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.81 72.0 5.59e-01 94.3% 93.9%
3960372 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 62.0 6.94e-01 81.1% 100.0%
4247805 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.80 73.0 5.68e-01 96.2% 95.7%
5023947 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.80 65.0 5.45e-01 84.9% 52.9%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 67.0 5.17e-01 87.7% 87.9%
3672433 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 65.0 4.60e-01 84.9% 69.7%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.80 71.0 5.44e-01 95.3% 90.2%
3278337 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 67.0 5.34e-01 88.7% 57.4%
3407383 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 68.0 4.98e-01 90.6% 95.0%
3216440 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.79 69.0 5.07e-01 93.4% 89.6%
3778454 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 65.0 5.41e-01 86.8% 70.9%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 63.0 6.13e-01 84.9% 83.5%
3277840 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 65.0 5.14e-01 88.7% 53.9%
3229867 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.76 65.0 4.84e-01 92.5% 88.8%
3406002 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 63.0 4.86e-01 88.7% 97.3%
2141908 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.75 61.0 4.94e-01 86.8% 53.8%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.74 62.0 5.29e-01 87.7% 95.7%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.74 63.0 4.76e-01 90.6% 92.1%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.74 62.0 5.00e-01 89.6% 97.5%
3428386 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.74 68.0 5.07e-01 99.1% 84.4%
3222818 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.74 64.0 4.78e-01 93.4% 87.8%
2779726 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.74 64.0 5.19e-01 91.5% 100.0%
3598734 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 59.0 4.54e-01 86.8% 88.5%
4953386 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.72 51.0 4.64e-01 72.6% 91.4%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 59.0 4.60e-01 90.6% 91.1%
4655762 1.1.17.21 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S55 0.70 63.0 5.01e-01 97.2% 75.6%
3968865 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 47.0 4.96e-01 73.6% 88.4%
3248403 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 59.0 5.45e-01 99.1% 96.3%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 36.0 3.86e-01 82.1% 77.8%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 31.0 3.55e-01 72.6% 76.2%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 35.0 3.76e-01 82.1% 78.9%
3999725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.65e-01 79.2% 78.8%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.51 42.0 3.81e-01 91.5% 79.3%
D3 medium residues 179-267_357-381
PDB
Domain cluster: rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 58.0 6.71e-01 77.2% 100.0%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 48.0 5.28e-01 78.1% 92.4%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.59 42.0 4.42e-01 76.3% 83.8%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.84e-01 74.6% 93.0%
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 36.0 4.17e-01 74.6% 94.9%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.81e-01 74.6% 83.0%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 42.0 3.44e-01 86.0% 76.2%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.56e-01 71.9% 93.1%
2jlpB00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.51 37.0 3.35e-01 78.1% 92.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2710030 1.1.5.12 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39 0.77 60.0 4.96e-01 81.6% 92.1%
3509500 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 54.0 3.99e-01 81.6% 85.9%
3469033 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 52.0 3.99e-01 85.1% 89.6%
3390498 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 41.0 3.13e-01 70.2% 39.2%
3943285 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 41.0 4.22e-01 72.8% 99.1%
3234951 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.58 45.0 3.46e-01 82.5% 87.6%
4412539 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 39.0 3.45e-01 72.8% 54.9%
4497258 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 39.0 3.61e-01 74.6% 71.0%
3602223 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 38.0 4.14e-01 73.7% 89.5%
4997606 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 38.0 3.51e-01 74.6% 58.7%
3246034 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.52 37.0 3.41e-01 74.6% 82.7%
3590646 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.51 37.0 3.67e-01 77.2% 94.4%
3806563 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 38.0 3.83e-01 80.7% 87.5%
3546967 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.45e-01 71.9% 83.1%
3508541 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.51 37.0 3.60e-01 77.2% 93.1%
5083609 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.65e-01 76.3% 95.8%