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hypothetical_protein

Euk-Vir

Hubei_diptera_virus_16

hypothetical_protein__YP_009336769__Hubei_diptera_virus_16__1922877

Identity

Accession:
YP_009336769 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

73.7 mean pLDDT

Taxonomy

Hubei_diptera_virus_16

TaxID: 1922877

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-263
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337879__Hubei_noda-like_virus_9__1922989__D136-259_287-345
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19222.6 best Noda_Vmethyltr 177.4 2.00e-52 66.7% 98.0%
D2 high residues 711-827
PDB
Domain cluster: rep: hypothetical_protein__YP_009337806__Shuangao_insect_virus_11__1923467__D743-868
D3 medium residues 264-353
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 40.0 4.53e-01 91.1% 77.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 56.0 4.90e-01 100.0% 85.7%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 32.0 3.64e-01 95.6% 62.9%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 37.0 4.12e-01 94.4% 84.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 35.0 3.88e-01 88.9% 74.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 4.13e-01 84.4% 92.9%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 34.0 3.69e-01 96.7% 67.1%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 46.0 3.33e-01 86.7% 67.0%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 31.0 3.51e-01 81.1% 68.7%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 46.0 4.34e-01 87.8% 99.1%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 45.0 4.00e-01 85.6% 85.2%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 43.0 3.83e-01 83.3% 97.0%
1iqoA00 3.30.160.120 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hypothetical protein MTH1880 0.56 40.0 4.11e-01 75.6% 97.7%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 28.0 3.72e-01 92.2% 97.8%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 32.0 3.20e-01 95.6% 52.0%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 45.0 3.15e-01 90.0% 53.2%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 40.0 3.80e-01 77.8% 95.5%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 42.0 3.28e-01 86.7% 85.5%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 41.0 3.85e-01 82.2% 100.0%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 46.0 4.20e-01 95.6% 70.4%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 3.97e-01 88.9% 92.2%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.52 35.0 3.29e-01 94.4% 54.9%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 36.0 3.90e-01 94.4% 90.5%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.50 40.0 3.59e-01 91.1% 78.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930705 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.68 50.0 4.86e-01 76.7% 83.0%
3738467 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.68 50.0 4.30e-01 77.8% 82.1%
3388887 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.66 34.0 3.94e-01 95.6% 69.2%
3392143 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 32.0 3.51e-01 95.6% 58.7%
3234295 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.61 49.0 4.66e-01 85.6% 83.8%
3909653 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 45.0 3.85e-01 80.0% 78.7%
3212945 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 33.0 3.99e-01 95.6% 81.4%
3861070 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.60 47.0 4.45e-01 85.6% 80.0%
3820607 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 30.0 3.47e-01 95.6% 66.2%
3606532 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.58 33.0 3.39e-01 95.6% 54.4%
3709649 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.58 43.0 3.88e-01 80.0% 83.8%
3774525 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 45.0 3.62e-01 84.4% 66.1%
3562700 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 43.0 3.78e-01 80.0% 94.8%
3994413 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 45.0 3.90e-01 85.6% 92.1%
4851967 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.57 36.0 4.09e-01 100.0% 91.9%
None — 0.56 44.0 3.62e-01 84.4% 68.2%
3260369 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 27.0 3.67e-01 95.6% 91.1%
3478366 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 44.0 4.27e-01 86.7% 96.2%
4930470 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 32.0 3.28e-01 81.1% 57.6%
4265586 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 32.0 2.90e-01 82.2% 40.0%
3262159 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 41.0 3.72e-01 80.0% 90.0%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 32.0 3.23e-01 82.2% 56.2%
3554073 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 42.0 3.74e-01 82.2% 82.3%
3408101 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 43.0 3.80e-01 85.6% 83.0%
3939734 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.55 45.0 4.41e-01 91.1% 84.0%
3798524 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.54 45.0 4.15e-01 90.0% 93.9%
3893274 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 3.65e-01 86.7% 96.0%
4380028 220.1.1.291 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.54 37.0 3.85e-01 94.4% 80.0%
3315492 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.54 42.0 3.75e-01 86.7% 91.1%
3388724 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 42.0 3.92e-01 85.6% 94.6%
3572060 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 43.0 3.99e-01 90.0% 93.3%
3606779 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 40.0 3.54e-01 82.2% 87.1%
3594572 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.71e-01 92.2% 73.5%
3619859 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 40.0 3.75e-01 86.7% 94.2%
3602836 284.1.3.6 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF749 0.52 43.0 4.15e-01 95.6% 80.0%
3864474 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.49e-01 90.0% 64.2%
3718300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 33.0 3.50e-01 96.7% 76.0%
3739035 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.88e-01 95.6% 98.3%
3386524 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 41.0 3.44e-01 90.0% 53.1%
3509606 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 39.0 3.15e-01 86.7% 57.9%
3493361 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 40.0 3.66e-01 85.6% 87.5%
5001377 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 31.0 3.25e-01 95.6% 65.9%
3882094 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.50 43.0 3.26e-01 97.8% 98.3%
4027440 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 39.0 3.73e-01 86.7% 95.5%
D4 medium residues 371-428_490-501
PDB
Domain cluster: rep: hypothetical_protein__YP_009336545__Beihai_sphaeromadae_virus_2__1922708__D384-439
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724078 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 44.0 2.64e-01 94.3% 43.5%
3167435 3758.1.1.32 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Spb1_C 0.51 33.0 3.71e-01 78.6% 94.0%
D5 medium residues 429-489_502-528_566-620
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3crvA02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.53 30.0 3.41e-01 93.0% 74.1%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 24.0 3.31e-01 81.1% 88.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.84 79.0 5.61e-01 100.0% 57.3%
1789314 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.81 75.0 5.37e-01 100.0% 56.6%
1411401 304.48.1.7 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 0.73 67.0 4.58e-01 100.0% 69.8%
2887 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.52 24.0 3.31e-01 81.1% 88.6%
D6 medium residues 529-565_621-710
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181