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hypothetical_protein

Euk-Vir

Hubei_permutotetra-like_virus_3

hypothetical_protein__YP_009337624__Hubei_permutotetra-like_virus_3__1923077

Identity

Accession:
YP_009337624 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

68.1 mean pLDDT

Taxonomy

Hubei_permutotetra-like_virus_3

TaxID: 1923077

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-112
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16504.11 best SP24 50.6 2.90e-13 98.7% 55.1%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.67 49.0 4.35e-01 100.0% 53.7%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 40.0 4.43e-01 88.2% 81.7%
2o8sA01 1.10.3700.10 Mainly Alpha › Orthogonal Bundle › AGR_C_984p-like › AGR C 984p-like 0.62 52.0 3.85e-01 97.4% 59.7%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 39.0 4.33e-01 88.2% 83.1%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.61 43.0 3.73e-01 88.2% 48.7%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.60 42.0 3.49e-01 96.1% 40.3%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 37.0 3.46e-01 86.8% 50.0%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 33.0 3.07e-01 88.2% 41.0%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 41.0 3.52e-01 84.2% 46.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 44.0 4.21e-01 88.2% 80.0%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 38.0 3.26e-01 100.0% 44.0%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 34.0 3.24e-01 88.2% 52.0%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 40.0 4.19e-01 93.4% 94.0%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.51 39.0 3.87e-01 86.8% 87.1%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.51 45.0 3.62e-01 100.0% 90.8%
2okuA00 1.20.120.470 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain 0.51 36.0 3.16e-01 76.3% 59.8%
3t9oB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.51 39.0 3.42e-01 85.5% 99.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029642 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 42.0 3.88e-01 88.2% 47.4%
3973390 632.18.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 › DUF4398 0.62 41.0 4.29e-01 96.1% 75.7%
5047356 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.57 36.0 3.87e-01 88.2% 75.4%
3258825 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 43.0 2.81e-01 92.1% 85.6%
3968484 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.53 39.0 4.11e-01 88.2% 85.7%
3931883 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.52 42.0 3.79e-01 90.8% 97.3%
3979729 3755.3.1.500 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › IpaC_SipC 0.51 42.0 3.56e-01 88.2% 55.8%
3691039 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.51 38.0 3.74e-01 86.8% 75.0%
3529572 109.4.1.898 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_leprecan 0.50 41.0 2.64e-01 93.4% 23.5%
3697355 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 41.0 3.23e-01 88.2% 43.2%
3969893 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.50 39.0 4.15e-01 82.9% 96.9%
5023515 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 39.0 2.64e-01 89.5% 85.2%
D2 medium residues 113-178
PDB