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hypothetical_protein
Euk-VirShuangao_insect_virus_11
hypothetical_protein__YP_009337806__Shuangao_insect_virus_11__1923467
Identity
- Accession:
- YP_009337806 ↗
- Protein ID:
- hypothetical_protein
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-70
D2
high
residues 97-223_260-279
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009337879__Hubei_noda-like_virus_9__1922989__D136-259_287-345
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19222.6 best | Noda_Vmethyltr | 136.6 | 7.40e-40 | 89.8% | 85.1% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fcdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 59.0 | 5.11e-01 | 100.0% | 99.6% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 58.0 | 5.21e-01 | 98.6% | 89.3% |
| 3ou2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 58.0 | 5.16e-01 | 100.0% | 86.8% |
| 2g1pB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 50.0 | 5.11e-01 | 98.6% | 94.5% |
| 2b8tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 48.0 | 4.91e-01 | 90.5% | 93.5% |
| 3icoA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 50.0 | 4.23e-01 | 95.2% | 94.7% |
| 3nwpA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 50.0 | 4.29e-01 | 95.9% | 93.1% |
| 3lhiA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 48.0 | 4.19e-01 | 95.2% | 95.7% |
| 1tt5C01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 3.71e-01 | 93.2% | 89.3% |
| 2fpoC00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 50.0 | 4.68e-01 | 100.0% | 87.8% |
| 4nh0A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 48.0 | 4.08e-01 | 97.3% | 76.0% |
| 1fy2A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 47.0 | 4.16e-01 | 96.6% | 84.5% |
| 4ofzA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 46.0 | 4.08e-01 | 95.2% | 88.9% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.53 | 26.0 | 3.60e-01 | 88.4% | 95.8% |
| 1y8qC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.57e-01 | 94.6% | 86.8% |
| 3eucA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 46.0 | 4.13e-01 | 96.6% | 73.9% |
| 3jx9A00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 40.0 | 3.89e-01 | 83.7% | 79.3% |
| 2ztgA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 33.0 | 2.79e-01 | 100.0% | 37.5% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 44.0 | 4.33e-01 | 96.6% | 95.6% |
| 2ofqA01 | 2.60.40.2500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 19.0 | 2.39e-01 | 91.2% | 51.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972133 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.72 | 66.0 | 5.60e-01 | 99.3% | 95.4% |
| 5013876 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.70 | 64.0 | 5.34e-01 | 100.0% | 94.4% |
| 5045080 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.69 | 63.0 | 5.27e-01 | 100.0% | 92.9% |
| 3361555 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.53 | 28.0 | 3.08e-01 | 100.0% | 60.8% |
| 5077594 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.53 | 22.0 | 3.41e-01 | 94.6% | 100.0% |
| 3711362 | 2004.1.1.296 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind | 0.52 | 42.0 | 3.68e-01 | 89.8% | 58.2% |
| 136576 | 2007.6.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › DUF2529 | 0.51 | 40.0 | 3.89e-01 | 83.7% | 79.3% |
D3
high
residues 743-868
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w9rA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 36.0 | 4.07e-01 | 99.2% | 91.5% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 30.0 | 3.08e-01 | 98.4% | 55.1% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 29.0 | 3.55e-01 | 98.4% | 83.3% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.51 | 45.0 | 4.57e-01 | 100.0% | 96.8% |
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.51 | 35.0 | 3.14e-01 | 71.4% | 92.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781758 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.56 | 29.0 | 2.75e-01 | 95.2% | 39.4% |
| 4013090 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.54 | 39.0 | 3.66e-01 | 96.8% | 62.7% |
| 3696908 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 47.0 | 3.53e-01 | 98.4% | 47.3% |
| 3977653 | 601.1.2.88 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MASE2 | 0.52 | 46.0 | 4.15e-01 | 100.0% | 75.0% |
| 3616543 | 109.3.1.229 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27576 | 0.51 | 40.0 | 3.72e-01 | 98.4% | 65.5% |
| 3797332 | 109.4.1.1449 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27576 | 0.50 | 40.0 | 3.66e-01 | 98.4% | 62.9% |
D4
medium
residues 433-557
Domain cluster:
rep: protein_A__NP_689439__Boolarra_virus__12286__D428-483_500-545
D5
medium
residues 558-595_647-740