←Back to structures

hypothetical_protein

Euk-Vir

Hubei_virga-like_virus_12

hypothetical_protein__YP_009337819__Hubei_virga-like_virus_12__1923327

Identity

Accession:
YP_009337819 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

78.8 mean pLDDT

Taxonomy

Hubei_virga-like_virus_12

TaxID: 1923327

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 105-218
PDB
Domain cluster: rep: putative_2a_protein__NP_619771__Pelargonium_zonate_spot_virus__116056__D201-297_358-380
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 38.3 1.10e-09 72.8% 18.4%
D2 medium residues 219-324
PDB
Domain cluster: rep: replicase_P2__YP_008519305__Blueberry_shock_virus__747056__D388-478
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 68.1 9.60e-19 97.2% 21.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.60 28.0 2.94e-01 85.8% 47.9%
2efvA00 3.30.70.3260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF10802, DUF2540 0.57 27.0 3.05e-01 80.2% 57.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3250871 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.67 54.0 4.85e-01 86.8% 74.7%
4187036 306.7.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain 0.55 33.0 3.32e-01 94.3% 56.4%
3585180 109.4.1.1316 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C 0.52 38.0 2.37e-01 77.4% 21.4%
D3 medium residues 325-364_422-502
PDB
Domain cluster: rep: hypothetical_protein__YP_009337242__Hubei_virga-like_virus_11__1923326__D790-809_821-831_888-944
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 87.6 1.20e-24 66.9% 17.1%
D4 medium residues 365-421
PDB
Domain cluster: rep: RNA_polymerase__YP_009551568__Tea_plant_line_pattern_virus__2419940__D443-495
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 50.2 2.60e-13 100.0% 13.0%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 43.0 2.89e-01 70.2% 68.6%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.62 39.0 3.38e-01 87.7% 39.8%
4narA02 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.61 45.0 3.24e-01 78.9% 66.5%
1td6A02 3.30.1790.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2 0.61 40.0 3.40e-01 89.5% 41.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.57 36.0 3.67e-01 98.2% 64.9%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 38.0 2.80e-01 100.0% 23.9%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.54 36.0 3.35e-01 86.0% 50.0%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 2.68e-01 86.0% 47.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 2.83e-01 73.7% 60.3%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 40.0 2.48e-01 80.7% 64.9%
3hlbD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 43.0 2.62e-01 89.5% 98.5%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 44.0 2.78e-01 93.0% 61.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.52 39.0 2.70e-01 87.7% 64.0%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 44.0 3.47e-01 98.2% 95.2%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 40.0 4.22e-01 82.5% 92.2%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 42.0 2.88e-01 100.0% 92.9%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.51 33.0 3.11e-01 100.0% 52.1%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 2.73e-01 100.0% 37.9%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.50 42.0 2.62e-01 100.0% 53.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 39.0 3.20e-01 86.0% 96.3%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 34.0 2.45e-01 71.9% 50.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4817079 327.11.2.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_8 0.75 44.0 3.83e-01 96.5% 40.2%
5011097 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.74 42.0 3.78e-01 96.5% 41.3%
4003509 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.73 64.0 4.69e-01 100.0% 37.4%
4830161 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.72 42.0 3.85e-01 86.0% 42.3%
6892 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.68 39.0 4.43e-01 78.9% 79.5%
3940665 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.68 45.0 2.99e-01 89.5% 16.7%
4289835 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.67 57.0 3.92e-01 100.0% 27.6%
3934573 2485.1.1.3 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin 0.60 45.0 3.53e-01 87.7% 37.6%
141070 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 37.0 3.79e-01 89.5% 64.9%
3650217 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 35.0 3.26e-01 87.7% 41.9%
4559277 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.58 36.0 3.89e-01 93.0% 77.8%
4180555 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 36.0 3.69e-01 94.7% 65.5%
4113442 101.26.1.2 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.57 45.0 3.36e-01 86.0% 35.2%
4366971 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 36.0 3.67e-01 94.7% 65.5%
4507562 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 35.0 3.63e-01 94.7% 65.5%
4148130 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 36.0 3.69e-01 94.7% 67.3%
4096474 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 34.0 3.59e-01 91.2% 68.0%
3249245 5000.4.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.57 48.0 3.18e-01 100.0% 68.6%
4065083 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.56 37.0 3.76e-01 96.5% 69.1%
3693835 601.1.1.90 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 0.55 47.0 3.44e-01 100.0% 85.3%
4993637 7516.1.1.23 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF2064 0.55 46.0 3.04e-01 94.7% 79.6%
3577414 2485.1.1.40 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 0.55 46.0 3.40e-01 94.7% 36.7%
3204071 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 41.0 2.49e-01 86.0% 57.1%
4537675 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.54 35.0 3.58e-01 98.2% 69.1%
4953504 7516.1.1.11 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 0.54 43.0 2.89e-01 87.7% 80.4%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.53 42.0 3.11e-01 86.0% 33.3%
4645555 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.53 33.0 3.51e-01 93.0% 72.0%
4440301 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 33.0 3.41e-01 96.5% 67.3%
4234747 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.51 35.0 3.50e-01 87.7% 70.7%
3446029 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.51 42.0 3.20e-01 98.2% 47.7%
3527717 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 31.0 3.19e-01 91.2% 64.2%
4362265 101.28.1.1 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.51 44.0 3.67e-01 100.0% 61.0%
4411256 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.51 36.0 2.54e-01 80.7% 79.1%
3227090 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.50 41.0 3.05e-01 100.0% 57.7%
3703840 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.50 44.0 3.06e-01 98.2% 31.1%
3992603 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.50 40.0 2.61e-01 89.5% 96.5%
3627709 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.50 42.0 3.05e-01 94.7% 90.8%
D5 medium residues 503-599
PDB
Domain cluster: rep: RdRp__YP_009388601__Aedes_camptorhynchus_negev-like_virus_Viruses.__X__D397-476
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 39.8 3.70e-10 80.4% 18.2%