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hypothetical_protein
Euk-VirWenzhou_tombus-like_virus_15
hypothetical_protein__YP_009342288__Wenzhou_tombus-like_virus_15__1923668
Identity
- Accession:
- YP_009342288 ↗
- Protein ID:
- hypothetical_protein
- Kingdom:
- euk
Quality
54.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67
D2
medium
residues 496-532_817-954
Domain cluster:
rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uz0A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 21.0 | 2.81e-01 | 96.0% | 66.7% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.51 | 28.0 | 3.14e-01 | 88.6% | 65.5% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 22.0 | 3.18e-01 | 91.4% | 87.3% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 28.0 | 3.65e-01 | 75.4% | 100.0% |
D3
medium
residues 533-568_683-718_739-750
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfzA02 | 1.10.8.610 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like | 0.56 | 36.0 | 3.81e-01 | 85.7% | 74.3% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 42.0 | 3.98e-01 | 82.1% | 83.8% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.53 | 39.0 | 3.52e-01 | 81.0% | 82.2% |
| 3ocjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 2.92e-01 | 92.9% | 86.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578491 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.59 | 33.0 | 3.44e-01 | 81.0% | 57.5% |
| 5012655 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.56 | 40.0 | 3.45e-01 | 77.4% | 61.5% |
| 4028455 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.50 | 38.0 | 3.38e-01 | 83.3% | 82.3% |
D4
medium
residues 569-648_719-738
Domain cluster:
rep: hypothetical_protein_2__YP_009333161__Hubei_tombus-like_virus_32__1923280__D105-190
D5
medium
residues 649-682_751-816