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hypothetical_protein

Euk-Vir

Botryosphaeria_dothidea_virus_1

hypothetical_protein__YP_009342471__Botryosphaeria_dothidea_virus_1__1516075

Identity

Accession:
YP_009342471 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

75.0 mean pLDDT

Taxonomy

Polymycoviridae› Polymycovirus› Botryosphaeria_dothidea_RNA_virus_1

TaxID: 1516075

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-134
PDB
Domain cluster: rep: hypothetical_protein_JT07_s4gp1__YP_009052473__Cladosporium_cladosporioides_virus_1__1529605__D64-126
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25660.2 best CcFV1_CP 92.4 4.50e-26 100.0% 24.9%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ywkA01 3.30.1640.10 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 0.74 58.0 5.07e-01 100.0% 56.7%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 47.0 5.02e-01 79.7% 83.6%
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.66 43.0 4.59e-01 73.4% 78.2%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.65 58.0 4.11e-01 100.0% 99.0%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.65 53.0 4.65e-01 93.8% 61.4%
3nhiA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 51.0 3.95e-01 89.1% 86.6%
1qe0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 44.0 2.88e-01 75.0% 72.3%
4h18A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 50.0 3.22e-01 90.6% 49.8%
6m4eA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 46.0 2.73e-01 84.4% 35.8%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.60 42.0 4.28e-01 76.6% 78.5%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.60 54.0 3.49e-01 100.0% 97.9%
6fnuA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.59 50.0 3.31e-01 98.4% 26.0%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 47.0 3.77e-01 90.6% 95.4%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 3.03e-01 84.4% 41.5%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 39.0 3.04e-01 71.9% 90.8%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.57 45.0 3.39e-01 85.9% 42.1%
2xecC00 3.40.50.12500 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 51.0 3.42e-01 100.0% 43.2%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 46.0 2.89e-01 90.6% 52.9%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.55 45.0 4.10e-01 87.5% 78.8%
2y2wC02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 50.0 3.08e-01 100.0% 24.7%
1sxjE02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 37.0 3.78e-01 75.0% 73.4%
6uqyB01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 46.0 3.09e-01 100.0% 58.5%
1nxzB02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.53 47.0 3.48e-01 100.0% 41.6%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 3.88e-01 93.8% 78.4%
4mduA02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 39.0 3.70e-01 82.8% 86.6%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.64e-01 93.8% 77.3%
5dcaA09 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.14e-01 98.4% 55.2%
2npnA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.51 43.0 3.54e-01 100.0% 94.6%
1wu3I00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 38.0 3.00e-01 87.5% 93.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4412841 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.83 44.0 3.33e-01 100.0% 24.4%
3712322 3050.1.1.0 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain 0.75 55.0 4.14e-01 84.4% 33.3%
3705785 3050.1.1.30 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 0.73 55.0 4.78e-01 84.4% 53.7%
3604641 3003.1.1.0 ↗ a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) 0.70 56.0 5.03e-01 100.0% 62.2%
5026914 3003.1.1.1 ↗ a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.68 56.0 4.88e-01 100.0% 61.1%
4989900 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.67 53.0 4.21e-01 89.1% 60.7%
222395 304.55.1.6 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobA_MobL 0.65 58.0 4.11e-01 100.0% 99.0%
4980095 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.62 45.0 3.82e-01 76.6% 81.9%
4429833 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 47.0 4.02e-01 84.4% 98.2%
4411663 3584.1.1.1 ↗ alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.61 52.0 3.62e-01 100.0% 33.6%
3847110 3003.1.1.6 ↗ a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › PF26063 0.61 55.0 4.62e-01 100.0% 70.5%
4143836 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.59 52.0 3.41e-01 100.0% 32.3%
3741182 2501.1.1.1 ↗ a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 0.59 45.0 3.44e-01 100.0% 37.1%
2168304 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.59 41.0 4.25e-01 71.9% 84.5%
3838810 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.57 47.0 2.95e-01 95.3% 98.7%
3958630 2002.1.1.22 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ICL 0.56 50.0 3.45e-01 100.0% 34.9%
3728766 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 45.0 3.50e-01 92.2% 59.3%
3722236 7604.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N 0.55 49.0 3.81e-01 100.0% 82.1%
1874010 176.1.1.1 ↗ alpha arrays › Annexin › Annexin › Annexin › Annexin 0.53 39.0 3.70e-01 82.8% 86.6%
3222773 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.53 48.0 3.51e-01 100.0% 40.6%
4999143 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 45.0 3.39e-01 100.0% 63.0%
3488779 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 45.0 3.07e-01 100.0% 46.9%
5038190 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.51 44.0 3.24e-01 100.0% 35.0%
4947959 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 3.23e-01 100.0% 34.0%
4020072 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 2.66e-01 100.0% 23.5%
D2 high residues 160-241
PDB
Domain cluster: rep: hypothetical_protein_JT07_s4gp1__YP_009052473__Cladosporium_cladosporioides_virus_1__1529605__D151-257
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25660.2 best CcFV1_CP 119.8 1.90e-34 100.0% 31.1%