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hypothetical_protein

Euk-Vir

Torque_teno_midi_virus_5

hypothetical_protein__YP_009505758__Torque_teno_midi_virus_5__2065046

Identity

Accession:
YP_009505758 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

79.7 mean pLDDT

Taxonomy

Shotokuvirae› Commensaviricota› Cardeaviricetes› Sanitavirales› Anelloviridae› Gammatorquevirus› Torque_teno_midi_virus_5

TaxID: 2065046

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-244_485-507
PDB
Domain cluster: rep: capsid__YP_009551495__Molossus_molossus_circovirus_3__1959844__D38-102_119-228
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 264.4 3.00e-78 90.5% 33.5%
D2 high residues 253-275_335-478
PDB
Domain cluster: rep: ORF1__YP_009505738__Torque_teno_mini_virus_11__2065037__D379-509
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 143.7 1.20e-41 100.0% 30.3%
D3 medium residues 276-334
PDB
Domain cluster: rep: ORF2__YP_238295__Small_anellovirus_1__289366__D289-347
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 44.0 3.46e-01 98.3% 32.8%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.24e-01 100.0% 29.4%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.59 41.0 4.23e-01 91.5% 83.0%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.59 35.0 3.42e-01 88.1% 51.5%
2ipiA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 43.0 2.97e-01 96.6% 22.1%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.01e-01 88.1% 33.1%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.55 46.0 3.24e-01 93.2% 65.3%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 46.0 3.63e-01 100.0% 81.2%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 3.88e-01 91.5% 97.9%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.34e-01 89.8% 44.2%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 43.0 3.46e-01 91.5% 48.0%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 45.0 3.61e-01 93.2% 54.3%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.17e-01 86.4% 86.6%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 40.0 3.25e-01 100.0% 41.1%
1grjA02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.52 42.0 3.95e-01 93.2% 93.5%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 44.0 3.03e-01 100.0% 33.9%
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 34.0 3.31e-01 100.0% 60.6%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.79e-01 96.6% 25.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 31.0 2.98e-01 76.3% 49.3%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 43.0 3.47e-01 100.0% 56.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.76e-01 98.3% 25.0%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 44.0 2.89e-01 100.0% 38.3%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.19e-01 91.5% 39.4%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.04e-01 98.3% 40.7%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 35.0 2.52e-01 76.3% 49.0%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.15e-01 94.9% 36.9%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.14e-01 94.9% 34.6%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.36e-01 94.9% 47.6%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.34e-01 94.9% 46.4%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.21e-01 94.9% 40.4%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.50 42.0 3.66e-01 96.6% 74.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1175478 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.62 38.0 3.55e-01 91.5% 50.0%
5021613 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.00e-01 96.6% 65.9%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 40.0 4.44e-01 89.8% 93.3%
3987692 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.57 42.0 3.96e-01 89.8% 65.7%
3340123 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 43.0 3.76e-01 91.5% 53.3%
5061487 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 41.0 3.10e-01 91.5% 32.6%
1562384 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.56 44.0 3.06e-01 98.3% 25.0%
3990889 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.55 43.0 3.19e-01 89.8% 62.4%
4960498 206.1.3.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.54 42.0 2.73e-01 88.1% 51.9%
4942093 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 46.0 3.27e-01 98.3% 47.9%
3942988 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.53 40.0 3.95e-01 100.0% 75.4%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 45.0 3.60e-01 94.9% 47.8%
3511356 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.53 43.0 3.58e-01 89.8% 93.3%
4368682 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.52 44.0 3.86e-01 100.0% 83.2%
3611560 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 45.0 3.57e-01 100.0% 58.4%
3742309 3792.1.1.2 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.52 38.0 3.47e-01 100.0% 57.5%
4298574 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.52 43.0 3.78e-01 100.0% 75.0%
3220637 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.52 41.0 3.43e-01 91.5% 83.5%
3385533 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.52 43.0 3.53e-01 100.0% 96.8%
4669741 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.52 43.0 3.67e-01 98.3% 56.8%
3960580 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 43.0 3.21e-01 94.9% 36.7%
4033192 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.07e-01 84.7% 46.2%
4796557 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.51 39.0 3.83e-01 89.8% 79.4%
3700521 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.59e-01 98.3% 61.2%
4443488 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.50 41.0 3.91e-01 96.6% 94.7%