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hypothetical_protein

Euk-Vir

Torque_teno_midi_virus_8

hypothetical_protein__YP_009505770__Torque_teno_midi_virus_8__2065049

Identity

Accession:
YP_009505770 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Shotokuvirae› Commensaviricota› Cardeaviricetes› Sanitavirales› Anelloviridae› Gammatorquevirus› Torque_teno_midi_virus_8

TaxID: 2065049

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-244_492-514
PDB
Domain cluster: rep: capsid__YP_009551495__Molossus_molossus_circovirus_3__1959844__D38-102_119-228
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 244.6 3.00e-72 91.1% 32.0%
D2 medium residues 249-274_354-487
PDB
Domain cluster: rep: ORF1__YP_009505738__Torque_teno_mini_virus_11__2065037__D379-509
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 132.9 2.10e-38 99.4% 28.8%
D3 medium residues 275-353
PDB
Domain cluster: rep: hypothetical_protein__YP_009505774__Torque_teno_midi_virus_9__2065050__D268-336
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 50.0 3.65e-01 94.9% 77.1%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 41.0 3.80e-01 77.2% 82.0%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 4.28e-01 93.7% 82.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 43.0 4.09e-01 86.1% 97.9%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 43.0 3.73e-01 86.1% 74.0%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 37.0 3.57e-01 70.9% 79.8%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.54 47.0 4.10e-01 96.2% 91.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.53e-01 74.7% 72.6%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.62e-01 87.3% 94.9%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.72e-01 94.9% 67.4%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.72e-01 94.9% 83.2%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.97e-01 96.2% 75.6%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.53 46.0 3.72e-01 98.7% 68.9%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.38e-01 78.5% 60.6%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.43e-01 84.8% 61.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 37.0 3.52e-01 73.4% 75.0%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 37.0 3.68e-01 87.3% 69.4%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.61e-01 87.3% 72.4%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.80e-01 94.9% 69.1%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.39e-01 74.7% 81.9%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 37.0 3.05e-01 74.7% 85.0%
4k6nA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.52 44.0 3.58e-01 94.9% 83.7%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 41.0 3.82e-01 88.6% 83.7%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.73e-01 91.1% 63.0%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.57e-01 88.6% 85.5%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 36.0 3.34e-01 72.2% 72.4%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.97e-01 94.9% 79.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.51 35.0 2.76e-01 73.4% 35.2%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.44e-01 88.6% 83.7%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 35.0 3.22e-01 73.4% 70.6%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.29e-01 89.9% 82.5%
5mj3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.82e-01 94.9% 78.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479862 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.40e-01 94.9% 72.2%
3943542 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 46.0 3.97e-01 84.8% 59.2%
3584192 11.1.4.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th 0.58 43.0 4.19e-01 94.9% 71.8%
5030093 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.56 44.0 4.53e-01 93.7% 90.7%
4992171 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 4.02e-01 72.2% 83.1%
5028854 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 38.0 3.16e-01 70.9% 41.0%
3484186 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 40.0 3.54e-01 75.9% 56.5%
4942656 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 39.0 3.62e-01 74.7% 79.0%
3184022 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 38.0 3.30e-01 73.4% 70.0%
3990889 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.55 43.0 3.39e-01 86.1% 88.2%
4368682 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.54 45.0 4.30e-01 93.7% 95.8%
4298574 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.54 45.0 4.20e-01 93.7% 93.0%
3707901 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 38.0 3.46e-01 73.4% 74.3%
4977038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.20e-01 94.9% 73.0%
3611195 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 38.0 3.45e-01 74.7% 70.9%
3606053 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 40.0 3.51e-01 83.5% 68.5%
3056322 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 37.0 3.36e-01 74.7% 78.2%
3888324 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.08e-01 94.9% 76.2%
3299228 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 36.0 3.03e-01 72.2% 55.0%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.52 36.0 3.50e-01 73.4% 75.6%
3377737 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.52 40.0 3.68e-01 84.8% 98.1%
3640623 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 35.0 3.25e-01 70.9% 59.0%
4932075 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 43.0 3.68e-01 92.4% 61.5%
3440667 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.51 35.0 3.73e-01 70.9% 100.0%
304148 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 41.0 3.57e-01 88.6% 85.5%
5069215 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.94e-01 96.2% 80.0%
3836831 221.1.1.7 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.51 35.0 3.36e-01 77.2% 62.2%
3504279 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.51 39.0 2.86e-01 87.3% 54.5%
3284021 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 36.0 3.28e-01 74.7% 79.1%
3838513 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 38.0 2.76e-01 79.7% 46.0%
3515391 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.50 39.0 2.86e-01 87.3% 55.6%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.50 40.0 3.58e-01 88.6% 73.0%
2455725 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.50 35.0 3.26e-01 74.7% 74.3%
3259144 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.50 39.0 3.36e-01 83.5% 76.0%
3971066 10.32.1.27 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 0.50 41.0 3.38e-01 93.7% 48.7%
D4 medium residues 603-669
PDB