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hypothetical_protein

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

hypothetical_protein__YP_009506077__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

Accession:
YP_009506077 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

82.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Trichoplusia_ni_granulovirus_LBIV-12

TaxID: 1916701

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-83
PDB
Domain cluster: rep: hypothetical_protein__YP_009091846__Erinnyis_ello_granulovirus__307444__D24-76
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.78 55.0 5.54e-01 73.4% 74.6%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.74 64.0 6.02e-01 100.0% 82.7%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.73 53.0 3.94e-01 78.1% 29.9%
6qumA04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.73 61.0 4.70e-01 95.3% 41.6%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 53.0 4.63e-01 78.1% 64.6%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 48.0 4.57e-01 73.4% 61.3%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 4.95e-01 78.1% 70.8%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.69 49.0 5.11e-01 76.6% 86.4%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.69 54.0 4.90e-01 92.2% 62.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.69 46.0 4.14e-01 70.3% 51.6%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.68 46.0 4.79e-01 78.1% 80.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 48.0 4.68e-01 76.6% 69.9%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.67 49.0 4.06e-01 76.6% 44.7%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.67 50.0 3.64e-01 81.2% 66.7%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.67 47.0 5.08e-01 76.6% 98.0%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 49.0 3.35e-01 78.1% 25.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 4.67e-01 76.6% 76.1%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 4.14e-01 78.1% 75.5%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 48.0 4.08e-01 78.1% 95.2%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.65 57.0 5.08e-01 98.4% 68.5%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.65 56.0 4.02e-01 100.0% 43.0%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.63 47.0 4.18e-01 81.2% 54.6%
4fb2A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 56.0 3.42e-01 100.0% 31.4%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 54.0 4.20e-01 100.0% 86.7%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.63 45.0 4.08e-01 76.6% 55.1%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 44.0 4.07e-01 76.6% 58.8%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 54.0 4.00e-01 100.0% 42.7%
2rfbA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 48.0 3.07e-01 87.5% 29.6%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 43.0 4.55e-01 76.6% 100.0%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.61 51.0 4.22e-01 98.4% 68.8%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 55.0 4.68e-01 100.0% 80.6%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.58 47.0 4.56e-01 93.8% 95.9%
4p32B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 3.21e-01 93.8% 30.9%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.56 46.0 3.67e-01 92.2% 62.1%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.55 43.0 3.74e-01 87.5% 69.2%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.31e-01 71.9% 71.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3450135 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.83 70.0 6.80e-01 100.0% 82.9%
3811835 7076.1.1.0 ↗ 0.82 73.0 7.35e-01 98.4% 98.5%
3970705 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.81 71.0 6.65e-01 100.0% 88.7%
3692897 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 53.0 5.01e-01 70.3% 100.0%
3231463 632.8.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.76 60.0 5.27e-01 85.9% 94.7%
4033036 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.75 58.0 5.57e-01 85.9% 88.0%
3963355 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.74 54.0 5.17e-01 78.1% 72.0%
3589720 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 54.0 4.14e-01 78.1% 35.2%
4943532 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 53.0 5.18e-01 76.6% 82.9%
3459724 604.1.1.102 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 0.73 54.0 4.45e-01 78.1% 51.3%
3504474 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.70 51.0 4.37e-01 100.0% 49.0%
5035232 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 50.0 4.94e-01 76.6% 78.6%
4990053 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.70 56.0 5.54e-01 95.3% 85.7%
3354093 632.1.1.16 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › FPP 0.69 56.0 5.35e-01 92.2% 84.0%
4016635 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.68 50.0 4.38e-01 79.7% 93.0%
4959130 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.68 57.0 5.58e-01 96.9% 88.6%
3592841 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.68 57.0 5.59e-01 96.9% 90.0%
5026881 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 49.0 4.67e-01 76.6% 86.7%
3709588 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.67 57.0 5.36e-01 100.0% 85.0%
4024277 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 49.0 4.66e-01 76.6% 86.7%
3813335 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.67 48.0 4.34e-01 87.5% 54.4%
4945931 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 49.0 4.75e-01 76.6% 82.9%
3648850 3567.1.1.93 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11 0.67 58.0 4.71e-01 98.4% 72.0%
4041347 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.66 48.0 4.01e-01 76.6% 46.4%
3737505 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 48.0 4.57e-01 76.6% 77.3%
3216079 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.65 54.0 4.92e-01 92.2% 71.8%
3170915 604.1.1.225 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29134 0.65 46.0 4.35e-01 76.6% 61.3%
3578718 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.65 49.0 4.35e-01 82.8% 90.5%
5027499 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.65 58.0 5.53e-01 100.0% 93.3%
3381499 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.65 46.0 2.80e-01 76.6% 13.3%
4017235 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.61 45.0 3.68e-01 78.1% 65.8%
3317246 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.60 40.0 3.42e-01 70.3% 41.8%
5070580 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.59 47.0 4.86e-01 95.3% 98.3%
54312 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.59 49.0 4.38e-01 96.9% 63.9%