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hypothetical_protein
Euk-VirCacao_swollen_shoot_CD_virus
hypothetical_protein__YP_009506250__Cacao_swollen_shoot_CD_virus__1960255
Identity
- Accession:
- YP_009506250 ↗
- Protein ID:
- hypothetical_protein
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Badnavirus›
Cacao_swollen_shoot_CD_virus
TaxID: 1960255
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-75
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 65.0 | 5.76e-01 | 100.0% | 67.6% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 51.0 | 5.11e-01 | 83.1% | 71.8% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 60.0 | 5.13e-01 | 90.1% | 60.4% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.72 | 56.0 | 4.04e-01 | 81.7% | 42.4% |
| 3ll9B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.72 | 57.0 | 3.88e-01 | 85.9% | 37.3% |
| 2fekA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.72 | 47.0 | 3.70e-01 | 78.9% | 32.7% |
| 3lnrA00 | 1.20.120.1530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 59.0 | 4.51e-01 | 95.8% | 40.0% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 51.0 | 5.26e-01 | 81.7% | 80.6% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.70 | 50.0 | 3.04e-01 | 73.2% | 62.9% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 58.0 | 5.42e-01 | 94.4% | 72.7% |
| 6cgaC02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 61.0 | 5.89e-01 | 95.8% | 93.6% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.67 | 61.0 | 3.69e-01 | 94.4% | 30.3% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 42.0 | 3.66e-01 | 74.6% | 43.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 57.0 | 4.78e-01 | 93.0% | 56.4% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 50.0 | 5.26e-01 | 87.3% | 90.5% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 50.0 | 3.89e-01 | 84.5% | 85.7% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 54.0 | 4.57e-01 | 95.8% | 60.5% |
| 6acsA00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.63 | 36.0 | 2.56e-01 | 78.9% | 17.8% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 48.0 | 3.13e-01 | 81.7% | 20.5% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 47.0 | 3.81e-01 | 81.7% | 88.8% |
| 5z5mA01 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.61 | 39.0 | 2.97e-01 | 87.3% | 30.9% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.61 | 43.0 | 3.86e-01 | 81.7% | 53.6% |
| 4huqS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.61 | 42.0 | 3.23e-01 | 81.7% | 31.1% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 43.0 | 3.68e-01 | 74.6% | 92.0% |
| 1wazA00 | 1.10.287.910 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › bacterial mercury transporter, merf | 0.60 | 36.0 | 4.36e-01 | 76.1% | 93.5% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.58 | 40.0 | 3.63e-01 | 81.7% | 54.3% |
| 1dosA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 47.0 | 3.10e-01 | 98.6% | 79.1% |
| 4wk5A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 43.0 | 2.93e-01 | 87.3% | 68.0% |
| 2xz0D00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.52 | 36.0 | 3.47e-01 | 71.8% | 100.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3620885 | 6159.1.1.0 ↗ | extended segments › Nup54 C-terminal interacting domain › Nup54 C-terminal interacting domain › Nup54 C-terminal interacting domain | 0.85 | 68.0 | 4.66e-01 | 100.0% | 26.7% |
| 3775068 | 604.1.1.24 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456 | 0.74 | 64.0 | 4.47e-01 | 94.4% | 43.6% |
| 4045132 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 64.0 | 5.47e-01 | 100.0% | 60.9% |
| 3475514 | 605.1.1.95 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TADA2A-like_3rd | 0.72 | 54.0 | 5.32e-01 | 87.3% | 74.7% |
| 3492854 | 5055.1.1.7 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › TADA2A-like_3rd | 0.71 | 56.0 | 4.98e-01 | 88.7% | 61.1% |
| 3215465 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.71 | 60.0 | 4.85e-01 | 97.2% | 50.0% |
| 3191400 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.71 | 58.0 | 4.68e-01 | 93.0% | 47.7% |
| 3785454 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.70 | 57.0 | 4.94e-01 | 90.1% | 59.0% |
| 5012473 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.70 | 59.0 | 5.04e-01 | 91.5% | 80.0% |
| 3921802 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.69 | 61.0 | 4.60e-01 | 97.2% | 78.2% |
| 3906366 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.69 | 62.0 | 4.75e-01 | 100.0% | 85.0% |
| 3412240 | 174.1.1.33 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 | 0.68 | 47.0 | 3.73e-01 | 83.1% | 38.5% |
| 3797019 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.68 | 59.0 | 3.77e-01 | 91.5% | 22.3% |
| 3339348 | 606.1.1.12 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Rx_N | 0.68 | 59.0 | 4.75e-01 | 93.0% | 91.5% |
| 3284322 | 601.7.1.23 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF294_C | 0.68 | 51.0 | 4.00e-01 | 78.9% | 49.0% |
| 3598262 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 61.0 | 4.43e-01 | 100.0% | 70.8% |
| 3437287 | 5086.1.1.199 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF31016 | 0.67 | 63.0 | 4.55e-01 | 100.0% | 65.7% |
| 1790170 | 1050.1.1.0 ↗ | alpha arrays › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) | 0.67 | 59.0 | 4.73e-01 | 98.6% | 76.6% |
| 4935669 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.66 | 55.0 | 4.28e-01 | 87.3% | 45.0% |
| 3722134 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 45.0 | 3.28e-01 | 73.2% | 25.6% |
| 3936972 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.65 | 53.0 | 4.55e-01 | 98.6% | 54.2% |
| 3788006 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 58.0 | 3.44e-01 | 95.8% | 22.4% |
| 4001542 | 109.4.1.1134 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8_3 | 0.65 | 51.0 | 3.14e-01 | 85.9% | 69.2% |
| 4002712 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.64 | 58.0 | 4.39e-01 | 98.6% | 45.6% |
| 3368384 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.63 | 55.0 | 3.79e-01 | 94.4% | 63.5% |
| 3913373 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 46.0 | 3.83e-01 | 94.4% | 45.0% |
| 3544536 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 49.0 | 4.36e-01 | 90.1% | 60.0% |
| 5019629 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.60 | 53.0 | 4.24e-01 | 95.8% | 50.4% |
| 3596938 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.60 | 53.0 | 3.75e-01 | 100.0% | 69.3% |
| 5064618 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.60 | 45.0 | 3.60e-01 | 80.3% | 60.0% |
| 3886005 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.60 | 45.0 | 3.82e-01 | 88.7% | 49.6% |
| 3601679 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.57 | 50.0 | 3.94e-01 | 100.0% | 87.1% |
| 4999172 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.54 | 44.0 | 3.70e-01 | 88.7% | 75.8% |
| 3398819 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.52 | 43.0 | 2.67e-01 | 93.0% | 36.3% |