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hypothetical_protein

Euk-Vir

Ying_Kou_virus

hypothetical_protein__YP_009552740__Ying_Kou_virus__2479372

Identity

Accession:: YP_009552740 ↗
Protein ID:: hypothetical_protein
Kingdom:: euk

Quality

74.8 mean pLDDT

Taxonomy

Negevirus› Ying_Kou_virus

TaxID: 2479372

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-46_221-291

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cz8A02	3.10.50.10	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.52	30.0	3.57e-01	95.0%	96.5%

D2 medium residues 47-101_292-304

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16506.11 best	DiSB-ORF2_chro	51.2	2.60e-13	79.4%	18.1%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5f1cA02	2.60.490.10	Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain	0.59	40.0	2.72e-01	72.1%	77.5%
5nfiB02	2.60.40.2090	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.57	42.0	3.50e-01	82.4%	82.0%
2i0kA03	3.40.462.10	Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain	0.57	49.0	3.33e-01	100.0%	67.5%
5wy8B03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	44.0	3.79e-01	89.7%	69.6%
2b9kA00	2.20.20.70	Mainly Beta › Single Sheet › Anthopleurin-A ›	0.54	36.0	4.04e-01	79.4%	100.0%
2ogkD00	3.30.1440.10	Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5	0.53	40.0	3.28e-01	86.8%	80.3%
3o3uN03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	41.0	3.56e-01	88.2%	75.7%
4tllC01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.52	36.0	2.95e-01	72.1%	77.5%
4gaaA01	2.60.40.1730	Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain	0.51	39.0	2.85e-01	83.8%	78.8%
1vjhA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.51	40.0	3.42e-01	89.7%	93.3%
3mjgX03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	39.0	3.55e-01	88.2%	74.3%
3it8D02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	40.0	3.38e-01	88.2%	78.2%
2yc3A00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.51	37.0	2.73e-01	82.4%	44.3%
2petA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	40.0	3.45e-01	91.2%	67.2%
4wgkA02	2.60.40.2300	Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain	0.50	40.0	3.25e-01	88.2%	70.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4002543	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	42.0	3.65e-01	85.3%	83.8%
3860289	11.1.1.297 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2	0.54	40.0	3.26e-01	86.8%	74.2%
3266262	7573.1.1.1 ↗	a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran	0.53	38.0	2.72e-01	77.9%	46.5%
3455690	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	40.0	3.17e-01	86.8%	81.2%
3782185	2003.1.5.156 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31	0.51	41.0	2.60e-01	91.2%	41.7%
3999603	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.50	42.0	3.80e-01	98.5%	72.0%

D3 medium residues 102-220

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009351822__Big_Cypress_virus_Viruses.__X__D104-123_170-288

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16506.11 best	DiSB-ORF2_chro	33.6	6.60e-08	100.0%	34.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3p54A02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.57	30.0	3.85e-01	83.2%	87.3%
6epkA02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.56	30.0	3.78e-01	92.4%	87.3%
4gu4A01	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.55	19.0	2.88e-01	72.3%	76.7%

D4 medium residues 307-400

PDB