←Back to structures

hypothetical_protein

Euk-Vir

Lonomia_obliqua_multiple_nucleopolyhedrovirus

hypothetical_protein__YP_009666453__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394

Identity

Accession:
YP_009666453 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lonomia_obliqua_multiple_nucleopolyhedrovirus

TaxID: 134394

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 62-121
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11077.15 best DUF2616 39.9 5.80e-10 100.0% 24.2%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.74 64.0 4.66e-01 98.3% 38.8%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 60.0 5.61e-01 93.3% 79.2%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.72 56.0 5.10e-01 95.0% 63.4%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.71 54.0 4.56e-01 96.7% 49.0%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 61.0 5.80e-01 100.0% 82.4%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.69 61.0 6.04e-01 98.3% 98.4%
2eboA00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 60.0 5.69e-01 100.0% 91.9%
7cosB02 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.69 50.0 4.64e-01 76.7% 64.9%
3crmA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.68 49.0 4.39e-01 80.0% 54.8%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 56.0 4.87e-01 100.0% 69.7%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 56.0 5.47e-01 100.0% 91.2%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 54.0 4.42e-01 100.0% 83.9%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 54.0 5.32e-01 100.0% 98.4%
1y14A01 1.20.1250.40 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit 0.59 47.0 3.66e-01 85.0% 78.9%
3cb2A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 49.0 4.94e-01 96.7% 96.7%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 44.0 4.63e-01 90.0% 100.0%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.52 44.0 4.38e-01 95.0% 98.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3750377 605.1.1.254 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MRVI1 0.87 80.0 7.18e-01 100.0% 100.0%
3393794 3922.1.1.211 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.80 70.0 5.42e-01 100.0% 74.1%
3907712 5086.1.1.150 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LUC7 0.79 67.0 6.23e-01 93.3% 82.7%
3386700 304.58.1.0 ↗ a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.78 64.0 4.01e-01 88.3% 20.3%
3239865 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.76 68.0 5.17e-01 98.3% 93.3%
3191844 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 64.0 3.74e-01 100.0% 13.7%
3424167 3826.1.1.84 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 0.70 59.0 5.34e-01 93.3% 68.8%
3266213 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.70 62.0 5.93e-01 98.3% 98.6%
3742136 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 54.0 5.02e-01 83.3% 72.0%
5008545 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 59.0 5.79e-01 98.3% 95.4%
3304783 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 54.0 5.16e-01 90.0% 94.3%
4025 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.66 56.0 4.87e-01 100.0% 69.7%
3283686 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 54.0 5.17e-01 93.3% 85.7%
5050356 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.63 53.0 5.14e-01 98.3% 98.6%
3646011 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 52.0 5.00e-01 98.3% 85.7%
D2 medium residues 122-176
PDB
Domain cluster: rep: hypothetical_protein_KM620_gp051__YP_010086318__Hyposidra_talaca_nucleopolyhedrovirus__1070315__D128-177
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11077.15 best DUF2616 37.8 2.50e-09 90.9% 22.5%