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hypothetical_protein

Euk-Vir

Neodiprion_abietis_NPV

hypothetical_protein__YP_667856__Neodiprion_abietis_NPV__204507

Identity

Accession:
YP_667856 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Gammabaculovirus› Neodiprion_abietis_nucleopolyhedrovirus

TaxID: 204507

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-89
PDB
Domain cluster: rep: p33__YP_025131__Neodiprion_sertifer_nucleopolyhedrovirus__111874__D4-85
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05214.19 best Baculo_p33 30.9 2.80e-07 100.0% 36.0%
D2 high residues 102-255
PDB
Domain cluster: rep: p33__YP_009255310__Catopsilia_pomona_nucleopolyhedrovirus__1850906__D106-196_220-272
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05214.19 best Baculo_p33 155.1 3.50e-45 100.0% 57.1%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nzeA00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.68 45.0 5.13e-01 71.4% 91.1%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.66 46.0 4.65e-01 71.4% 94.9%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.64 42.0 4.20e-01 100.0% 64.3%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 44.0 4.07e-01 70.8% 90.0%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.62 43.0 4.35e-01 70.1% 72.8%
1zzpA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 41.0 4.69e-01 75.3% 95.4%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.60 48.0 4.44e-01 85.1% 95.5%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.60 39.0 4.27e-01 100.0% 79.4%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.59 47.0 4.96e-01 94.8% 96.3%
2iiuA00 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.58 51.0 4.63e-01 96.1% 70.7%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 32.0 3.92e-01 95.5% 88.2%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.56 48.0 4.93e-01 99.4% 94.6%
5lweA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 46.0 3.78e-01 89.0% 80.0%
4xt1A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 46.0 3.73e-01 90.9% 80.8%
3jz0A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 40.0 4.30e-01 100.0% 93.1%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 36.0 4.13e-01 77.9% 100.0%
4a25B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 3.87e-01 81.2% 90.1%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 44.0 4.16e-01 97.4% 83.9%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.50 40.0 4.17e-01 98.1% 93.5%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 31.0 3.60e-01 90.3% 84.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4885878 601.1.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CHASE3 0.73 53.0 5.45e-01 77.9% 77.3%
3227250 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.70 49.0 4.95e-01 94.8% 71.2%
5020411 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.70 51.0 5.19e-01 77.9% 76.7%
3760737 601.16.1.17 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › PF27561 0.67 50.0 5.25e-01 77.9% 90.7%
1518845 601.41.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein › DUF3829_2nd 0.66 44.0 5.12e-01 99.4% 95.3%
3398468 601.16.1.9 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › PF31076 0.66 50.0 5.29e-01 80.5% 89.3%
4947845 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.64 52.0 4.65e-01 87.0% 89.5%
4139505 601.13.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS 0.64 42.0 4.56e-01 90.9% 79.2%
5077822 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.63 53.0 4.79e-01 89.6% 98.0%
5080716 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.62 53.0 4.84e-01 90.9% 98.0%
5073872 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.62 51.0 4.61e-01 89.6% 93.5%
4991090 5069.1.1.3 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.61 56.0 4.69e-01 100.0% 93.1%
3250233 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 47.0 4.43e-01 98.7% 69.2%
3612403 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.59 42.0 4.36e-01 86.4% 76.6%
3273836 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.59 43.0 3.32e-01 74.7% 81.2%
5073298 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.59 50.0 4.56e-01 91.6% 94.6%
4996913 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.59 49.0 4.50e-01 90.9% 94.6%
308022 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.58 51.0 4.59e-01 96.1% 68.7%
5044488 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.57 47.0 4.64e-01 100.0% 83.0%
5054354 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.57 41.0 4.04e-01 75.3% 73.5%
1716751 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.55 32.0 4.02e-01 79.2% 100.0%
5079173 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.54 48.0 4.37e-01 99.4% 98.6%
4996484 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.52 44.0 4.43e-01 100.0% 90.0%
3943936 150.1.1.143 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › FUSC 0.52 47.0 4.78e-01 94.8% 100.0%
4026288 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.52 38.0 3.41e-01 76.6% 86.3%
5068840 632.25.1.8 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor N-terminal domain › GBS CAMP factor N-terminal domain › NADH_4Fe-4S 0.51 35.0 4.07e-01 85.7% 100.0%
2388540 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 42.0 3.86e-01 89.0% 87.4%