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hypothetical_protein_ceV_221

Euk-Vir

Chrysochromulina_ericina_virus

hypothetical_protein_ceV_221__YP_009173476__Chrysochromulina_ericina_virus__455364

Identity

Accession:
YP_009173476 ↗
Protein ID:
hypothetical_protein_ceV_221
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Chrysochromulina_ericina_virus

TaxID: 455364

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-48
PDB
D2 high residues 54-130
PDB
Domain cluster: rep: hypothetical_protein_MEL_353__YP_009094854__Melbournevirus__1560514__D107-191
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.69 50.0 3.58e-01 75.3% 44.4%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.67 55.0 4.46e-01 97.4% 46.6%
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 56.0 5.37e-01 94.8% 94.3%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 51.0 4.28e-01 88.3% 87.0%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.62 45.0 4.93e-01 93.5% 100.0%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 48.0 4.64e-01 92.2% 83.9%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 46.0 4.52e-01 93.5% 81.2%
3x3bA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 41.0 2.89e-01 77.9% 55.7%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.57 38.0 3.21e-01 70.1% 49.3%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 4.40e-01 94.8% 81.0%
4btfA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 45.0 3.40e-01 94.8% 68.7%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.53 45.0 3.74e-01 98.7% 77.4%
7aqbB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 44.0 3.39e-01 94.8% 89.6%
1nslA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.44e-01 94.8% 91.5%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 27.0 3.05e-01 85.7% 59.6%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 44.0 3.59e-01 98.7% 53.5%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.52 43.0 4.12e-01 100.0% 81.1%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 46.0 3.47e-01 100.0% 73.9%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.51 39.0 3.95e-01 83.1% 87.3%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 39.0 3.55e-01 84.4% 68.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4205646 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.70 54.0 5.82e-01 93.5% 100.0%
4030134 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.68 62.0 5.05e-01 98.7% 68.1%
3960065 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.67 56.0 5.06e-01 94.8% 67.6%
3192559 148.1.3.216 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7069 0.67 62.0 5.97e-01 100.0% 91.8%
3824761 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 55.0 5.75e-01 93.5% 100.0%
4203116 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.66 52.0 5.60e-01 90.9% 100.0%
4004443 4953.2.1.3 ↗ beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › NA37 0.66 50.0 4.40e-01 90.9% 56.4%
4017306 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.65 54.0 5.34e-01 90.9% 92.5%
4056990 101.1.2.501 ↗ alpha arrays › HTH › HTH › winged helix domain › NA37 0.64 48.0 4.30e-01 90.9% 56.4%
None — 0.64 52.0 3.80e-01 92.2% 76.4%
4116135 4009.1.1.11 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › NA37 0.63 48.0 4.21e-01 90.9% 53.9%
3330830 3238.1.1.1 ↗ alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF 0.63 54.0 3.46e-01 97.4% 22.5%
4033886 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.63 53.0 4.94e-01 94.8% 82.0%
3333015 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 53.0 5.14e-01 98.7% 100.0%
4175747 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 50.0 4.86e-01 93.5% 78.9%
3805926 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.61 52.0 5.07e-01 96.1% 100.0%
4391745 3009.1.1.13 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › NA37 0.59 47.0 4.45e-01 97.4% 72.2%
3706783 375.1.1.195 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-KKT2_KKT3 0.54 29.0 3.34e-01 87.0% 70.9%
4929513 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 24.0 3.03e-01 88.3% 70.0%
3738336 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.53 27.0 3.01e-01 83.1% 60.0%
4284004 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.53 40.0 3.07e-01 84.4% 86.2%
3683526 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.52 42.0 3.12e-01 92.2% 40.5%
3888575 10.12.1.46 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CENP-C_C 0.50 41.0 3.50e-01 88.3% 99.2%
3962784 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 22.0 2.96e-01 92.2% 82.9%