←Back to structures
hypothetical_protein_crov337
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
hypothetical_protein_crov337__YP_003969970__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003969970 ↗
- Protein ID:
- hypothetical_protein_crov337
- Kingdom:
- euk
Quality
71.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.86 | 58.0 | 6.49e-01 | 70.0% | 100.0% |
| 1qu3A04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.86 | 71.0 | 5.15e-01 | 88.3% | 37.3% |
| 2i9cA01 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.83 | 62.0 | 5.03e-01 | 81.7% | 43.2% |
| 3l0iA01 | 1.20.120.1520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.83 | 59.0 | 4.15e-01 | 75.0% | 25.6% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.82 | 60.0 | 6.67e-01 | 78.3% | 100.0% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.82 | 64.0 | 6.90e-01 | 85.0% | 100.0% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.82 | 67.0 | 6.80e-01 | 90.0% | 91.7% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.81 | 67.0 | 5.89e-01 | 88.3% | 61.6% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 56.0 | 5.98e-01 | 73.3% | 84.6% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 63.0 | 4.51e-01 | 83.3% | 31.9% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 59.0 | 5.75e-01 | 80.0% | 71.2% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.79 | 62.0 | 4.40e-01 | 83.3% | 31.1% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.78 | 59.0 | 4.66e-01 | 83.3% | 41.7% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 66.0 | 4.95e-01 | 93.3% | 55.6% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.77 | 61.0 | 4.49e-01 | 86.7% | 33.5% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 57.0 | 5.39e-01 | 83.3% | 66.7% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 59.0 | 5.86e-01 | 85.0% | 100.0% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 59.0 | 4.99e-01 | 95.0% | 56.9% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 50.0 | 5.29e-01 | 83.3% | 100.0% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 54.0 | 5.06e-01 | 93.3% | 74.7% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.64 | 47.0 | 4.68e-01 | 80.0% | 77.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3316583 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.90 | 72.0 | 5.28e-01 | 85.0% | 35.2% |
| 5051638 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.90 | 69.0 | 7.26e-01 | 81.7% | 89.1% |
| 4883518 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.88 | 63.0 | 6.01e-01 | 75.0% | 66.2% |
| 3204386 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.87 | 66.0 | 5.12e-01 | 81.7% | 40.0% |
| 4930198 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.87 | 67.0 | 6.73e-01 | 81.7% | 81.7% |
| 4832459 | 3291.1.1.54 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 | 0.86 | 67.0 | 6.53e-01 | 83.3% | 76.9% |
| 3819834 | 605.6.1.8 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › Mlo | 0.85 | 62.0 | 5.73e-01 | 78.3% | 61.3% |
| 5035450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.84 | 59.0 | 5.07e-01 | 75.0% | 47.4% |
| 4530141 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.83 | 63.0 | 6.77e-01 | 81.7% | 100.0% |
| 4514051 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.82 | 64.0 | 5.10e-01 | 83.3% | 45.2% |
| 3175368 | 376.1.3.81 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Rbsn | 0.82 | 63.0 | 5.87e-01 | 83.3% | 68.0% |
| 4973347 | 515.1.1.4 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 | 0.82 | 64.0 | 4.51e-01 | 83.3% | 30.6% |
| 4477580 | 5086.1.1.118 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp | 0.81 | 65.0 | 5.75e-01 | 86.7% | 62.4% |
| 5039485 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.81 | 63.0 | 4.30e-01 | 83.3% | 26.0% |
| None | — | 0.81 | 60.0 | 3.48e-01 | 81.7% | 9.3% | |
| 4949471 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.81 | 64.0 | 4.50e-01 | 85.0% | 30.3% |
| 3484742 | 3922.1.1.197 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp | 0.80 | 65.0 | 5.79e-01 | 88.3% | 65.9% |
| 4347101 | 5086.1.1.119 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C | 0.80 | 69.0 | 5.96e-01 | 93.3% | 62.2% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.80 | 62.0 | 5.49e-01 | 83.3% | 61.2% |
| 3186698 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.80 | 63.0 | 5.75e-01 | 86.7% | 66.3% |
| 3944931 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.79 | 63.0 | 5.49e-01 | 86.7% | 58.9% |
| 3493683 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.79 | 61.0 | 4.01e-01 | 83.3% | 21.8% |
| 4324075 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.79 | 58.0 | 6.32e-01 | 81.7% | 97.9% |
| 3470615 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.79 | 60.0 | 3.92e-01 | 83.3% | 20.4% |
| 3240117 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.78 | 62.0 | 5.44e-01 | 86.7% | 63.3% |
| 3840552 | 5086.1.1.90 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I | 0.77 | 61.0 | 4.40e-01 | 85.0% | 32.1% |
| 3699536 | 109.4.1.1123 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PSMD3_N | 0.77 | 66.0 | 4.50e-01 | 91.7% | 92.6% |
| 3499075 | 109.4.1.445 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps54_N | 0.74 | 65.0 | 3.82e-01 | 98.3% | 36.3% |
| 5008490 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.74 | 61.0 | 5.35e-01 | 91.7% | 64.8% |
| 3784740 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.73 | 56.0 | 5.28e-01 | 85.0% | 70.7% |
| 3614494 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.67 | 58.0 | 3.83e-01 | 100.0% | 72.3% |