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hypothetical_protein_crov374

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

hypothetical_protein_crov374__YP_003970007__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970007 ↗
Protein ID:
hypothetical_protein_crov374
Kingdom:
euk

Quality

62.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Rheavirus› Cafeteria_roenbergensis_virus_BV-PW1

TaxID: 693272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 231-315
PDB
Domain cluster: rep: SWIB_MDM2_domain-containing_protein__YP_010084768__Shrimp_hemocyte_iridescent_virus__2039780__D52-119_203-218
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.79 69.0 6.49e-01 92.9% 78.2%
2ruhA00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.79 71.0 6.04e-01 96.5% 65.6%
1uhrA00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.78 71.0 6.85e-01 100.0% 89.2%
5bykA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 57.0 4.03e-01 95.3% 70.5%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 41.0 4.11e-01 89.4% 63.6%
1nj4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 51.0 3.65e-01 96.5% 78.8%
4c2mA06 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.57 45.0 3.72e-01 88.2% 77.4%
4r9fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 42.0 3.22e-01 80.0% 81.6%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 40.0 4.09e-01 98.8% 78.0%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.55 37.0 3.39e-01 85.9% 51.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.54 38.0 3.62e-01 72.9% 76.5%
1nyaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.49e-01 90.6% 91.5%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 45.0 4.13e-01 92.9% 94.5%
2ncoA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 40.0 3.81e-01 92.9% 67.6%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 4.01e-01 92.9% 80.5%
1evlA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 44.0 4.04e-01 92.9% 92.0%
4x9tA01 3.40.190.150 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bordetella uptake gene, domain 1 0.52 43.0 3.46e-01 90.6% 72.5%
2i9uA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 42.0 2.95e-01 92.9% 92.9%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 39.0 3.97e-01 98.8% 83.3%
3bvoB01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 40.0 3.89e-01 94.1% 74.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023906 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.87 69.0 7.34e-01 94.1% 94.7%
3304793 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.86 71.0 7.36e-01 94.1% 92.5%
3478963 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.85 70.0 7.48e-01 94.1% 98.7%
3342458 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.84 71.0 7.15e-01 94.1% 89.4%
3937307 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 68.0 6.88e-01 94.1% 87.1%
3242477 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.83 70.0 7.04e-01 94.1% 90.6%
3804979 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.82 68.0 7.05e-01 94.1% 95.0%
52416 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.82 68.0 6.59e-01 94.1% 80.6%
3433591 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.82 72.0 6.91e-01 94.1% 94.7%
3366090 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.82 72.0 6.90e-01 94.1% 94.7%
3653924 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.81 68.0 6.78e-01 94.1% 88.5%
3447434 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.80 70.0 7.07e-01 94.1% 96.5%
3445 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.79 69.0 6.49e-01 92.9% 78.2%
3927329 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.79 69.0 6.78e-01 94.1% 95.6%
3580401 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.79 68.0 6.85e-01 94.1% 92.9%
3832446 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.78 67.0 7.04e-01 92.9% 100.0%
3357973 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.78 68.0 7.00e-01 92.9% 98.8%
3228151 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.78 68.0 6.67e-01 97.6% 87.8%
3789240 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.77 64.0 6.62e-01 94.1% 95.0%
3423103 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.77 67.0 6.74e-01 92.9% 92.9%
3645524 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 47.0 4.67e-01 94.1% 62.2%
3653649 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.69 52.0 5.26e-01 81.2% 91.8%
3263245 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 42.0 4.39e-01 89.4% 69.2%
3839204 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.67 49.0 3.80e-01 94.1% 36.7%
3182808 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 44.0 4.85e-01 91.8% 98.5%
3749798 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 42.0 4.31e-01 75.3% 97.5%
5016168 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.58 49.0 5.02e-01 95.3% 100.0%
4982318 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.56 38.0 4.38e-01 98.8% 100.0%
3888831 4015.1.1.0 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.55 48.0 3.33e-01 98.8% 37.0%
5058380 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.53 46.0 4.44e-01 100.0% 98.0%
4887533 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.52 39.0 3.67e-01 97.6% 65.4%
3681879 67.1.1.5 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ 0.52 42.0 4.11e-01 89.4% 86.3%
5055941 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.50 44.0 4.12e-01 98.8% 100.0%
5051104 205.1.1.131 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_9 0.50 39.0 3.11e-01 85.9% 76.2%
4144849 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.50 43.0 3.99e-01 95.3% 79.6%
D2 medium residues 158-223
PDB
Domain cluster: representative