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hypothetical_protein_crov427

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

hypothetical_protein_crov427__YP_003970060__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970060 ↗
Protein ID:
hypothetical_protein_crov427
Kingdom:
euk

Quality

89.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Rheavirus› Cafeteria_roenbergensis_virus_BV-PW1

TaxID: 693272

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: rep: hypothetical_protein_crov114__YP_003969746__Cafeteria_roenbergensis_virus_BV-PW1__693272__D230-293
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hg2B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 65.0 4.58e-01 100.0% 63.7%
2xwtC00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.73 64.0 4.13e-01 100.0% 32.1%
4k05A01 3.40.50.12170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF07075, DUF1343 0.70 59.0 3.90e-01 100.0% 63.9%
2g1uA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 59.0 4.40e-01 100.0% 72.3%
7clgB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 59.0 4.28e-01 100.0% 63.6%
3alfA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.69 59.0 3.75e-01 100.0% 35.3%
1amuA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 56.0 3.97e-01 94.1% 44.2%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.67 57.0 3.58e-01 100.0% 41.0%
2yvaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.67 56.0 3.87e-01 100.0% 54.9%
5kzkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.67 54.0 3.93e-01 96.1% 39.1%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.66 55.0 3.51e-01 100.0% 37.7%
3cyjA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 54.0 3.60e-01 100.0% 30.8%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.66 55.0 3.50e-01 100.0% 39.3%
1i4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 53.0 3.52e-01 100.0% 30.3%
2kjqA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 55.0 4.23e-01 100.0% 46.8%
2qaiB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.65 53.0 4.49e-01 96.1% 84.6%
2b7nA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 53.0 3.99e-01 100.0% 39.7%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 51.0 3.61e-01 98.0% 68.2%
1lziA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.64 50.0 3.30e-01 96.1% 22.7%
2ejbA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.63 51.0 3.64e-01 96.1% 54.0%
4iv5A01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.62 50.0 3.77e-01 100.0% 57.9%
2jbmA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 50.0 3.78e-01 100.0% 39.7%
2an1D01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.61 52.0 3.91e-01 100.0% 55.6%
1vkfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 50.0 3.62e-01 100.0% 40.1%
5i7wA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 46.0 3.74e-01 96.1% 45.6%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 47.0 3.53e-01 100.0% 65.6%
3aekA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.58 48.0 3.72e-01 98.0% 61.0%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 48.0 3.87e-01 100.0% 76.4%
6ks6Q03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.57 44.0 3.34e-01 96.1% 52.6%
5d84A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.65e-01 96.1% 46.8%
5ji5A00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.53 44.0 2.81e-01 96.1% 93.4%
7p0jA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.52 44.0 3.73e-01 100.0% 92.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3298708 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.79 65.0 4.30e-01 100.0% 22.3%
3468855 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 68.0 4.77e-01 98.0% 32.3%
3361668 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 61.0 4.16e-01 92.2% 25.1%
3259696 207.1.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.77 67.0 5.22e-01 96.1% 45.8%
3265630 207.1.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.77 67.0 4.52e-01 100.0% 28.9%
3316459 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 69.0 4.14e-01 100.0% 20.6%
3671507 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.77 65.0 4.19e-01 98.0% 24.5%
3301172 207.1.1.133 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 0.76 65.0 4.51e-01 100.0% 29.0%
3822015 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.74 63.0 3.86e-01 100.0% 17.2%
3453790 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.73 63.0 4.08e-01 100.0% 26.7%
3659089 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 65.0 4.57e-01 100.0% 48.4%
5002848 2007.2.2.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › LMWPc 0.73 61.0 4.45e-01 96.1% 70.3%
3439148 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.72 63.0 4.37e-01 100.0% 37.7%
3429080 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 61.0 4.21e-01 100.0% 36.2%
3430858 207.1.1.143 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 0.71 61.0 3.73e-01 100.0% 30.3%
4136117 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.71 58.0 4.19e-01 96.1% 48.8%
3622152 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.70 60.0 3.75e-01 100.0% 72.0%
3958946 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.70 58.0 4.23e-01 96.1% 51.3%
3458799 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 59.0 3.82e-01 100.0% 32.0%
4044283 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.69 59.0 3.78e-01 100.0% 42.6%
4888031 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.68 57.0 3.97e-01 100.0% 74.5%
3213969 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.68 57.0 3.82e-01 100.0% 35.6%
None — 0.67 55.0 3.28e-01 96.1% 14.5%
3515721 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.67 59.0 3.83e-01 100.0% 48.4%
2603883 7514.1.1.2 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › SIP 0.67 54.0 4.06e-01 98.0% 38.2%
4029001 2004.1.1.123 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD 0.66 56.0 3.54e-01 100.0% 38.0%
4265071 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.66 53.0 4.05e-01 96.1% 46.7%
3453334 207.1.1.99 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 0.66 56.0 4.05e-01 100.0% 51.3%
3332818 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.66 56.0 4.35e-01 100.0% 59.2%
2770404 7514.1.1.2 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › SIP 0.65 53.0 3.98e-01 98.0% 37.7%
3216377 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 51.0 3.00e-01 100.0% 21.6%
3231811 7579.1.1.12 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_2 0.62 51.0 3.29e-01 100.0% 40.3%
4991689 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.61 48.0 3.24e-01 96.1% 31.2%
4502617 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.60 50.0 4.16e-01 100.0% 71.0%
3591716 2488.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.59 48.0 3.53e-01 98.0% 35.0%
5053071 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.59 49.0 3.48e-01 100.0% 50.8%
4991846 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.58 49.0 3.48e-01 100.0% 60.0%
4994686 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.57 48.0 3.34e-01 100.0% 57.4%
4259226 7510.1.1.3 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis 0.56 44.0 3.30e-01 98.0% 37.5%
3178180 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 43.0 3.26e-01 100.0% 59.4%
3720917 7575.1.1.11 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.53 42.0 2.97e-01 100.0% 42.9%
D2 medium residues 262-415
PDB
Domain cluster: rep: hypothetical_protein_crov507__YP_003970140__Cafeteria_roenbergensis_virus_BV-PW1__693272__D280-427
Pfam (5)
AccessionNameScoreE-valueQ covHMM cov
PF13306.13 best LRR_5 22.3 1.50e-04 76.6% 81.1%
PF13306.13 LRR_5 19.4 1.10e-03 66.9% 64.6%
PF05725.19 FNIP 38.9 1.00e-09 28.6% 97.7%
PF05725.19 FNIP 31.1 3.00e-07 27.3% 93.2%
PF05725.19 FNIP 30.7 4.00e-07 23.4% 81.8%
D3 medium residues 416-538
PDB
Domain cluster: rep: putative_F-box_and_FNIP_repeat-containing_protein__YP_003986918__Acanthamoeba_polyphaga_mimivirus__212035__D319-406
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF05725.19 best FNIP 32.4 1.10e-07 35.8% 100.0%
PF05725.19 FNIP 51.7 1.00e-13 35.0% 93.2%
PF05725.19 FNIP 34.2 3.00e-08 28.5% 70.5%
D4 medium residues 539-627
PDB
Domain cluster: rep: hypothetical_protein_crov511__YP_003970144__Cafeteria_roenbergensis_virus_BV-PW1__693272__D414-500
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05725.19 best FNIP 31.9 1.70e-07 46.1% 93.2%