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hypothetical_protein_crov474

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

hypothetical_protein_crov474__YP_003970107__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970107 ↗
Protein ID:
hypothetical_protein_crov474
Kingdom:
euk

Quality

67.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 269-371
PDB
D2 medium residues 3-35_65-178
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ckmA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.80 77.0 7.56e-01 100.0% 95.5%
3rtxA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.79 75.0 7.22e-01 100.0% 97.0%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.77 73.0 6.06e-01 98.6% 78.0%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.76 71.0 5.90e-01 98.6% 79.6%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.70 51.0 5.84e-01 77.6% 99.1%
6p0cA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.68 51.0 5.54e-01 77.6% 98.4%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.67 51.0 5.61e-01 77.6% 100.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7118 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.80 77.0 6.46e-01 100.0% 75.4%
3688782 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.79 75.0 5.34e-01 100.0% 48.6%
None 0.78 73.0 5.23e-01 98.0% 49.7%
1298640 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.77 73.0 6.04e-01 98.6% 77.0%
3784943 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.77 72.0 5.14e-01 98.6% 48.6%
4027847 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.75 71.0 6.06e-01 98.6% 77.3%
3716788 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.73 69.0 5.60e-01 100.0% 73.5%
3872907 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.70 59.0 4.87e-01 88.4% 60.8%
3894770 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.70 59.0 4.86e-01 88.4% 61.6%
3701347 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 66.0 4.90e-01 100.0% 49.7%
3704365 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.69 65.0 5.67e-01 100.0% 78.6%
3240894 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.69 57.0 4.60e-01 86.4% 64.2%
3595473 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.68 64.0 5.48e-01 99.3% 76.4%
3414267 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.67 54.0 4.46e-01 85.7% 61.5%
3997608 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.67 56.0 4.46e-01 88.4% 58.6%
3578637 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.66 54.0 4.29e-01 86.4% 54.5%
3476642 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.66 56.0 4.66e-01 89.1% 66.9%
3939998 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.65 54.0 4.41e-01 86.4% 63.5%
3588565 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.56 29.0 3.63e-01 81.6% 81.8%
4381510 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 30.0 3.60e-01 97.3% 90.3%
D3 medium residues 36-64_179-222
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.82 74.0 5.03e-01 97.3% 85.6%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.80 72.0 4.90e-01 97.3% 85.8%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.71 62.0 5.91e-01 95.9% 100.0%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.71 59.0 5.95e-01 93.2% 100.0%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.66 56.0 5.68e-01 94.5% 100.0%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 44.0 4.10e-01 100.0% 57.8%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.63 53.0 3.55e-01 98.6% 50.9%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.70e-01 93.2% 92.9%
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 44.0 3.78e-01 95.9% 47.4%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 4.28e-01 94.5% 94.5%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.61 51.0 4.26e-01 95.9% 77.4%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 4.11e-01 89.0% 95.0%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.52e-01 87.7% 92.7%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 44.0 3.31e-01 98.6% 30.4%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 45.0 3.27e-01 100.0% 28.6%
7jw6A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 46.0 3.34e-01 100.0% 29.3%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 49.0 3.65e-01 100.0% 49.5%
3safB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 45.0 3.04e-01 100.0% 21.8%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 47.0 3.94e-01 90.4% 92.4%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.95e-01 90.4% 96.1%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.51e-01 100.0% 43.5%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 44.0 3.81e-01 100.0% 51.7%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 3.64e-01 84.9% 86.0%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.30e-01 74.0% 64.7%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.10e-01 94.5% 94.8%
2cr6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.27e-01 90.4% 89.0%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 4.00e-01 86.3% 79.6%
4dguA01 2.60.40.2680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.96e-01 90.4% 81.2%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 47.0 4.18e-01 97.3% 87.7%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.54 42.0 3.61e-01 89.0% 96.2%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.91e-01 90.4% 95.3%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 40.0 3.81e-01 83.6% 83.7%
2dkuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.09e-01 91.8% 88.8%
1eajB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.89e-01 97.3% 95.8%
2e6qA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.87e-01 93.2% 82.1%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.55e-01 98.6% 88.7%
7ahsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.97e-01 90.4% 94.0%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 35.0 3.12e-01 72.6% 67.8%
2xxlA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.51e-01 97.3% 83.6%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.89e-01 95.9% 100.0%
3k2oA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.50 40.0 2.78e-01 93.2% 42.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.83 76.0 4.74e-01 100.0% 54.9%
3495502 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.81 73.0 4.81e-01 97.3% 86.4%
3310146 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.81 75.0 4.67e-01 100.0% 56.4%
1298640 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.81 75.0 5.07e-01 100.0% 84.5%
3293200 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.80 74.0 4.91e-01 100.0% 76.6%
3716788 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.78 72.0 4.80e-01 100.0% 76.2%
5070559 206.1.3.23 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.67 58.0 4.12e-01 100.0% 73.8%
1155494 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.64 46.0 3.90e-01 75.3% 71.1%
431522 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.64 44.0 4.06e-01 100.0% 55.9%
3172253 2004.1.1.212 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.63 53.0 3.38e-01 97.3% 31.7%
3386428 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.60 50.0 3.72e-01 98.6% 48.4%
5013637 221.1.3.1 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.60 46.0 3.62e-01 84.9% 90.9%
3290558 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 47.0 3.78e-01 90.4% 92.3%
4024542 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 40.0 4.25e-01 100.0% 85.0%
3713327 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 50.0 3.70e-01 100.0% 52.4%
5018908 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 46.0 3.90e-01 90.4% 88.1%
3225783 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.58 45.0 3.34e-01 86.3% 55.2%
3881492 109.4.1.411 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.58 40.0 2.73e-01 74.0% 22.9%
3217079 211.1.1.17 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.57 39.0 4.24e-01 100.0% 94.5%
3891368 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.30e-01 100.0% 94.8%
3612075 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 3.57e-01 100.0% 53.3%
3500089 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.26e-01 95.9% 94.3%
3193711 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 49.0 3.43e-01 100.0% 73.2%
3604671 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 44.0 3.69e-01 91.8% 97.8%
3278441 211.1.1.11 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 0.55 38.0 4.19e-01 100.0% 96.4%
3176925 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.53 45.0 4.53e-01 95.9% 98.7%
3882388 11.1.1.110 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_2 0.53 43.0 3.87e-01 91.8% 96.2%
3737483 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.53 44.0 3.48e-01 97.3% 64.1%
57 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 43.0 3.46e-01 95.9% 85.0%
146288 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.52 34.0 3.74e-01 76.7% 96.1%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.98e-01 83.6% 98.6%
3256636 3613.1.1.2 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › NOL9_C 0.51 38.0 3.57e-01 82.2% 73.7%
4017716 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 2.57e-01 98.6% 76.9%
5047406 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.50 44.0 3.19e-01 100.0% 64.5%
4882445 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.50 43.0 3.19e-01 98.6% 70.7%
3529491 11.1.1.110 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_2 0.50 42.0 3.69e-01 100.0% 91.7%