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hypothetical_protein_crov538

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

hypothetical_protein_crov538__YP_003970171__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970171 ↗
Protein ID:
hypothetical_protein_crov538
Kingdom:
euk

Quality

77.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Rheavirus› Cafeteria_roenbergensis_virus_BV-PW1

TaxID: 693272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-44
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vloD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 62.0 4.00e-01 100.0% 53.8%
6wjaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 59.0 3.84e-01 100.0% 55.7%
1jl3A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 57.0 4.07e-01 100.0% 69.3%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.67 55.0 3.84e-01 100.0% 53.2%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.67 54.0 3.73e-01 100.0% 25.8%
2jjmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 54.0 3.68e-01 100.0% 33.0%
3sqsA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 53.0 3.40e-01 100.0% 21.4%
2wi8A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.66 53.0 3.99e-01 100.0% 67.5%
4m37A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 53.0 3.86e-01 100.0% 72.4%
3f4lA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 53.0 4.02e-01 100.0% 44.6%
2vsqA04 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 53.0 3.85e-01 100.0% 51.5%
3ebvA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 52.0 3.25e-01 100.0% 24.9%
5f33A03 3.40.50.10800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NadA-like 0.64 50.0 4.30e-01 100.0% 72.6%
3h1tA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 53.0 3.63e-01 100.0% 41.8%
1pv9B01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.61 49.0 3.79e-01 100.0% 80.7%
2couA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.61 52.0 4.22e-01 100.0% 65.2%
1iayA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 48.0 3.12e-01 100.0% 28.8%
3vbcA00 3.40.50.11530 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 48.0 3.49e-01 100.0% 66.9%
2yybA02 3.40.1390.30 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like 0.56 42.0 3.35e-01 100.0% 35.9%
3lzdA03 3.40.50.11860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 3 0.55 45.0 3.56e-01 100.0% 72.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002848 2007.2.2.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › LMWPc 0.73 60.0 4.30e-01 100.0% 67.6%
3325432 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.72 60.0 3.77e-01 100.0% 20.4%
5059537 2007.2.2.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › LMWPc 0.72 60.0 4.28e-01 100.0% 69.6%
4957790 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.72 59.0 4.23e-01 100.0% 55.0%
3447377 207.1.1.143 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 0.69 58.0 3.46e-01 100.0% 17.5%
4030983 2007.2.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.67 55.0 4.28e-01 100.0% 66.7%
3248211 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.66 53.0 3.50e-01 100.0% 26.5%
3701007 2488.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.66 52.0 3.70e-01 100.0% 31.2%
4948247 7512.1.1.54 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 0.65 54.0 3.78e-01 100.0% 31.2%
4609343 7512.1.1.12 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.65 52.0 3.60e-01 100.0% 29.4%
4615831 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.65 55.0 3.74e-01 100.0% 44.8%
3584633 7568.1.1.4 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.64 53.0 4.14e-01 100.0% 79.0%
3187320 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.64 50.0 3.16e-01 100.0% 17.0%
3620453 101.1.2.532 ↗ alpha arrays › HTH › HTH › winged helix domain › FAM91_N, FAM91_C 0.64 53.0 3.10e-01 100.0% 29.5%
4499353 2007.1.7.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.64 52.0 3.73e-01 100.0% 52.0%
3794495 7568.1.1.1 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.63 52.0 4.07e-01 100.0% 79.0%
4406771 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.63 50.0 3.74e-01 100.0% 51.5%
3627579 7568.1.1.4 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.63 52.0 4.16e-01 100.0% 87.4%
3602789 2007.1.8.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.63 52.0 3.95e-01 100.0% 45.2%
5066306 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.63 50.0 3.80e-01 100.0% 79.2%
3515669 2487.1.1.1 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.63 51.0 4.18e-01 100.0% 51.1%
3676419 2007.1.1.49 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › FAM91_C 0.61 50.0 3.54e-01 100.0% 81.0%
3824063 7516.1.1.38 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › RGP 0.59 48.0 2.96e-01 100.0% 14.9%
3441136 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 39.0 2.68e-01 76.7% 17.2%
3993706 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.58 49.0 4.17e-01 100.0% 73.3%
2059285 2007.1.5.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Amdase 0.58 43.0 3.44e-01 100.0% 81.1%
3596276 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.57 46.0 3.98e-01 97.7% 77.3%
5024333 7509.1.1.1 ↗ a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 0.55 43.0 3.30e-01 100.0% 35.0%
4098947 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.54 42.0 3.99e-01 97.7% 93.3%
5060309 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.54 43.0 3.32e-01 100.0% 40.0%
3898345 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.52 42.0 2.52e-01 100.0% 15.3%