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hypothetical_protein_ml_438
Euk-VirMollivirus_sibericum_Viruses.
hypothetical_protein_ml_438__YP_009165404__Mollivirus_sibericum_Viruses.__X
Identity
- Accession:
- YP_009165404 ↗
- Protein ID:
- hypothetical_protein_ml_438
- Kingdom:
- euk
Quality
43.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 266-327
Domain cluster:
rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01191.25 best | RNA_pol_Rpb5_C | 23.6 | 4.70e-05 | 91.9% | 57.5% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzfA02 | 3.90.940.20 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.83 | 77.0 | 7.27e-01 | 100.0% | 84.9% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.77 | 35.0 | 2.96e-01 | 100.0% | 25.7% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 38.0 | 2.70e-01 | 100.0% | 17.4% |
| 2l2fA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.74 | 35.0 | 2.91e-01 | 100.0% | 25.0% |
| 2jzlA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.68 | 38.0 | 3.07e-01 | 100.0% | 30.6% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.25e-01 | 82.3% | 34.1% |
| 3kqxL01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.58 | 40.0 | 2.94e-01 | 74.2% | 42.0% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 37.0 | 3.63e-01 | 71.0% | 100.0% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 41.0 | 3.32e-01 | 85.5% | 89.7% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 43.0 | 3.36e-01 | 93.5% | 39.3% |
| 1fs7A01 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.54 | 44.0 | 2.82e-01 | 90.3% | 47.6% |
| 1mzgB00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.52 | 37.0 | 2.90e-01 | 75.8% | 46.9% |
| 3sm3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 2.91e-01 | 90.3% | 95.3% |
| 1qe5A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.52 | 41.0 | 2.72e-01 | 88.7% | 26.3% |
| 8a57D02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 39.0 | 2.91e-01 | 91.9% | 41.4% |
| 6lbtA01 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 42.0 | 3.33e-01 | 100.0% | 88.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596039 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.88 | 80.0 | 7.68e-01 | 98.4% | 87.1% |
| 4861748 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.88 | 81.0 | 7.70e-01 | 100.0% | 87.3% |
| 3824571 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.88 | 81.0 | 7.58e-01 | 100.0% | 82.7% |
| 4838977 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.86 | 79.0 | 7.33e-01 | 100.0% | 81.6% |
| 4253107 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.86 | 78.0 | 7.37e-01 | 100.0% | 84.9% |
| 3607644 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.85 | 79.0 | 7.39e-01 | 100.0% | 83.8% |
| 4600910 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.85 | 77.0 | 7.42e-01 | 100.0% | 88.6% |
| 3033324 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.83 | 75.0 | 7.17e-01 | 100.0% | 86.1% |
| 3591097 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 37.0 | 2.37e-01 | 100.0% | 12.8% |
| 4089268 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 39.0 | 3.51e-01 | 98.4% | 43.3% |
| 3936876 | 2004.1.1.124 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CDC73_C | 0.62 | 45.0 | 3.57e-01 | 77.4% | 53.6% |
| 3484523 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.61 | 37.0 | 2.34e-01 | 100.0% | 12.1% |
| 3688597 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.60 | 36.0 | 2.57e-01 | 100.0% | 19.7% |
| 3997757 | 2004.1.1.124 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CDC73_C | 0.60 | 44.0 | 3.17e-01 | 79.0% | 36.7% |
| 4986861 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.59 | 40.0 | 3.63e-01 | 71.0% | 94.4% |
| 4559415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 44.0 | 2.71e-01 | 91.9% | 85.7% |
| 4947896 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 49.0 | 3.91e-01 | 100.0% | 66.4% |
| 3500712 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 46.0 | 3.37e-01 | 95.2% | 37.8% |
| 3685962 | 219.1.1.41 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 | 0.54 | 42.0 | 2.83e-01 | 90.3% | 82.9% |
| 3786205 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 44.0 | 3.49e-01 | 93.5% | 96.4% |
| 3248411 | 2004.1.1.15 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU,EFTUD2 | 0.54 | 44.0 | 2.74e-01 | 95.2% | 22.6% |
| 4429397 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.53 | 46.0 | 3.36e-01 | 98.4% | 94.7% |
| 3650852 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.53 | 46.0 | 3.75e-01 | 100.0% | 83.3% |
| 5061016 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.52 | 43.0 | 2.99e-01 | 91.9% | 38.1% |
| 3473720 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.52 | 46.0 | 3.80e-01 | 100.0% | 85.5% |
| 4084495 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 44.0 | 3.71e-01 | 95.2% | 88.6% |
| 4097524 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 45.0 | 4.34e-01 | 98.4% | 94.3% |
| 3232864 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.51 | 42.0 | 4.42e-01 | 93.5% | 100.0% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 44.0 | 3.74e-01 | 95.2% | 92.0% |
| 3554902 | 7516.1.1.7 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › UDPGP | 0.51 | 45.0 | 2.73e-01 | 100.0% | 87.3% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.50 | 44.0 | 3.68e-01 | 100.0% | 89.9% |
D2
medium
residues 6-108_235-261
D3
medium
residues 127-167_210-234