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hypothetical_protein_ml_52

Euk-Vir

Mollivirus_sibericum_Viruses.

hypothetical_protein_ml_52__YP_009165018__Mollivirus_sibericum_Viruses.__X

Identity

Accession:
YP_009165018 ↗
Protein ID:
hypothetical_protein_ml_52
Kingdom:
euk

Quality

62.8 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-135
PDB
D2 medium residues 143-313
PDB
D3 medium residues 341-445
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c0qB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 62.0 3.72e-01 100.0% 15.4%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 53.0 4.38e-01 85.7% 80.5%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.66 43.0 4.41e-01 70.5% 68.7%
3t6aA00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.66 55.0 3.98e-01 92.4% 56.5%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.66 51.0 4.49e-01 82.9% 89.1%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 58.0 5.10e-01 97.1% 91.6%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.65 48.0 4.34e-01 78.1% 74.3%
2genA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 50.0 4.13e-01 83.8% 81.4%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 50.0 4.12e-01 83.8% 80.1%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 49.0 4.05e-01 83.8% 78.6%
2v57A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 50.0 4.33e-01 86.7% 78.4%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 4.03e-01 89.5% 83.7%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 42.0 3.75e-01 70.5% 59.0%
8hk0C01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 42.0 3.66e-01 71.4% 58.0%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 44.0 4.09e-01 77.1% 62.6%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.59 37.0 3.21e-01 73.3% 41.2%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 41.0 3.90e-01 71.4% 92.6%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 46.0 3.83e-01 85.7% 80.3%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.81e-01 73.3% 78.0%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.57 49.0 4.42e-01 98.1% 91.6%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 39.0 3.62e-01 71.4% 78.2%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 49.0 4.81e-01 100.0% 93.2%
3kp9A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.56 43.0 3.74e-01 81.0% 59.3%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 39.0 2.82e-01 70.5% 79.8%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 41.0 3.75e-01 79.0% 73.8%
7eqeB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 40.0 3.45e-01 76.2% 79.9%
2g3kA00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.53 38.0 4.06e-01 76.2% 95.7%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 38.0 3.44e-01 77.1% 82.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4166627 109.4.1.1681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TMEM232 0.72 66.0 5.43e-01 100.0% 91.4%
4501245 109.4.1.1681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TMEM232 0.72 66.0 5.44e-01 100.0% 91.4%
3512675 109.4.1.1579 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TELO2_ARM 0.71 62.0 5.13e-01 93.3% 77.8%
4430230 109.4.1.1579 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TELO2_ARM 0.71 61.0 5.03e-01 93.3% 74.6%
3932690 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.70 48.0 5.22e-01 71.4% 86.7%
3629818 109.4.1.506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.70 63.0 4.37e-01 100.0% 35.4%
3995298 109.4.1.506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.68 61.0 4.28e-01 100.0% 35.7%
3703277 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.68 45.0 5.33e-01 72.4% 100.0%
3507884 109.4.1.506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.68 62.0 4.22e-01 100.0% 45.0%
3925416 109.4.1.1361 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 0.67 58.0 4.57e-01 100.0% 44.9%
3515234 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 58.0 5.28e-01 100.0% 90.3%
3711249 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 58.0 3.44e-01 100.0% 12.6%
3583793 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.65 37.0 3.43e-01 72.4% 46.2%
3608296 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 5.41e-01 93.3% 94.3%
4817370 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.60 52.0 4.63e-01 100.0% 97.5%
1146575 109.39.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › transcription anti-terminator antagonist UpxZ › transcription anti-terminator antagonist UpxZ › UpxZ 0.59 52.0 4.57e-01 97.1% 68.8%
3932965 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.58 48.0 4.05e-01 92.4% 93.1%
3278203 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.58 40.0 3.73e-01 73.3% 77.9%
3424914 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.58 50.0 3.63e-01 100.0% 60.9%
3289653 191.1.1.8 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_33 0.58 40.0 3.78e-01 72.4% 79.2%
5031891 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 43.0 4.31e-01 85.7% 81.5%
4100508 3843.1.1.4 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB 0.55 38.0 3.68e-01 71.4% 70.8%
4934754 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.54 41.0 3.42e-01 83.8% 84.0%
4958517 316.1.1.43 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF294 0.53 46.0 3.78e-01 96.2% 90.3%
3505050 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.51 39.0 3.83e-01 82.9% 89.6%
3789188 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.50 34.0 2.57e-01 70.5% 64.7%
D4 medium residues 446-521
PDB
Domain cluster: rep: hypothetical_protein_ml_48__YP_009165014__Mollivirus_sibericum_Viruses.__X__D424-515