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hypothetical_protein_pdul_cds_100

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_100__YP_008318674__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318674 ↗
Protein ID:
hypothetical_protein_pdul_cds_100
Kingdom:
euk

Quality

72.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-173
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_245__YP_008318872__Pandoravirus_dulcis__1349409__D32-163
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19166.7 best DUF5848 53.7 2.50e-14 33.5% 71.9%
D2 high residues 193-319
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19249.5 best DUF5897 115.8 2.90e-33 55.1% 35.0%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.70 28.0 3.31e-01 75.6% 52.1%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 32.0 4.11e-01 89.0% 85.9%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 31.0 4.33e-01 87.4% 100.0%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.62 29.0 3.82e-01 100.0% 80.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 31.0 4.08e-01 96.1% 89.7%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 31.0 3.49e-01 89.8% 62.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 31.0 3.94e-01 96.1% 82.7%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 31.0 3.78e-01 89.8% 75.6%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 3.96e-01 96.1% 82.3%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 28.0 3.68e-01 89.8% 80.3%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 30.0 3.79e-01 96.1% 83.6%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 31.0 3.81e-01 88.2% 82.1%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 29.0 3.70e-01 97.6% 81.1%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 28.0 3.61e-01 87.4% 80.3%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 30.0 3.68e-01 88.2% 85.5%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.90e-01 93.7% 91.4%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 33.0 3.51e-01 99.2% 68.1%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 29.0 3.60e-01 99.2% 85.7%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 44.0 4.01e-01 90.6% 85.4%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 50.0 4.65e-01 100.0% 87.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 27.0 3.49e-01 80.3% 85.3%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 40.0 3.02e-01 81.1% 90.9%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 26.0 3.27e-01 88.2% 81.3%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.50 39.0 3.68e-01 81.9% 81.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599618 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.66 26.0 2.11e-01 78.0% 20.0%
3715818 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 32.0 3.73e-01 89.8% 65.3%
3506156 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 32.0 4.06e-01 89.0% 81.3%
4015654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 31.0 4.13e-01 88.2% 85.7%
3592930 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 32.0 3.69e-01 89.8% 65.3%
3890091 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.63 31.0 3.87e-01 88.2% 75.0%
3396989 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.63 32.0 3.64e-01 89.8% 63.0%
4029204 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.63 32.0 3.85e-01 89.8% 72.9%
1175040 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 30.0 4.32e-01 87.4% 100.0%
4876565 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 32.0 3.72e-01 89.8% 68.9%
2391272 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 32.0 3.66e-01 89.8% 66.7%
3617549 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 32.0 3.47e-01 89.0% 60.0%
3606838 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 32.0 3.69e-01 89.8% 67.4%
4876572 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 32.0 3.74e-01 89.8% 71.6%
2581118 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 31.0 3.30e-01 89.8% 54.4%
3518029 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 32.0 3.56e-01 89.8% 64.0%
3486357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 34.0 4.11e-01 99.2% 87.5%
4884271 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.59 31.0 3.88e-01 89.8% 87.5%
4015537 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 31.0 3.81e-01 89.8% 82.1%
4983255 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 29.0 3.59e-01 88.2% 78.7%
5000810 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 30.0 3.56e-01 89.8% 74.1%
3600405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 4.09e-01 100.0% 88.9%
4948069 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 30.0 3.77e-01 100.0% 89.3%
3706504 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 33.0 3.90e-01 96.9% 88.2%
3941378 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.55 31.0 3.50e-01 97.6% 72.6%
5075579 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 28.0 3.45e-01 99.2% 78.8%
5026934 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.54 28.0 3.46e-01 90.6% 80.0%
3626400 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.52 29.0 2.97e-01 100.0% 52.3%
3237927 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.50 41.0 3.83e-01 88.2% 73.1%
D3 high residues 331-425
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19249.5 best DUF5897 181.3 2.50e-53 100.0% 46.5%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 44.0 4.01e-01 72.6% 69.0%
1z3xA01 1.25.40.620 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 45.0 3.90e-01 80.0% 56.9%
3p5nA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.61 45.0 3.83e-01 80.0% 75.0%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.61 43.0 4.30e-01 74.7% 98.0%
3k7xA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 43.0 2.94e-01 73.7% 28.8%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.60 53.0 4.69e-01 100.0% 92.9%
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 45.0 3.79e-01 85.3% 72.0%
4x28A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 44.0 3.63e-01 82.1% 53.4%
1vu2201 1.20.58.1070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.51e-01 80.0% 61.2%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.55 41.0 3.57e-01 76.8% 73.4%
3o7qA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.55 41.0 3.35e-01 81.1% 65.1%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 41.0 3.61e-01 82.1% 85.2%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.54 37.0 3.88e-01 71.6% 97.7%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 36.0 3.55e-01 84.2% 65.0%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.53 40.0 3.74e-01 82.1% 89.7%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 36.0 3.35e-01 83.2% 55.0%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.54e-01 82.1% 85.5%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.53 44.0 3.73e-01 91.6% 96.1%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.72e-01 85.3% 75.9%
3dtyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 44.0 3.66e-01 100.0% 77.9%
4bx8A04 1.25.40.850 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b 0.51 41.0 4.15e-01 88.4% 90.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3658236 604.12.1.69 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SRP68 0.61 44.0 4.03e-01 90.5% 56.8%
3970693 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.56 45.0 3.64e-01 83.2% 52.4%
2482262 109.4.1.275 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.55 39.0 3.00e-01 74.7% 32.2%
3570731 4973.1.1.6 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › UBN_AB 0.54 43.0 4.40e-01 85.3% 91.1%
3798231 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.37e-01 91.6% 68.4%
3264732 109.4.1.128 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.52 44.0 3.29e-01 95.8% 51.2%
3782389 109.60.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › RPAP3 C-terminal domain-like › RPAP3 C-terminal domain-like › RPAP3_C 0.51 38.0 3.64e-01 81.1% 87.0%