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hypothetical_protein_pdul_cds_1035
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_1035__YP_008319977__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319977 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_1035
- Kingdom:
- euk
Quality
65.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 161-279
D2
medium
residues 280-437
D3
medium
residues 438-513
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 49.0 | 4.51e-01 | 78.9% | 70.3% |
| 1sw6A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.65 | 55.0 | 3.88e-01 | 97.4% | 82.3% |
| 2qeuB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.65 | 54.0 | 4.54e-01 | 93.4% | 77.4% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 42.0 | 4.70e-01 | 75.0% | 84.7% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 51.0 | 4.46e-01 | 92.1% | 80.2% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 46.0 | 3.59e-01 | 84.2% | 53.8% |
| 2vq2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 47.0 | 3.35e-01 | 84.2% | 33.2% |
| 5djsA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 45.0 | 3.65e-01 | 84.2% | 47.6% |
| 2y4tB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 42.0 | 2.79e-01 | 80.3% | 20.1% |
| 1a17A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 3.41e-01 | 82.9% | 45.9% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.56 | 44.0 | 4.32e-01 | 84.2% | 95.2% |
| 1w3bB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 2.80e-01 | 84.2% | 19.0% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.56 | 44.0 | 3.95e-01 | 84.2% | 83.5% |
| 2qcvA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 46.0 | 3.24e-01 | 100.0% | 44.3% |
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 48.0 | 3.75e-01 | 98.7% | 73.5% |
| 4nrhB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 45.0 | 3.59e-01 | 100.0% | 78.2% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 41.0 | 3.48e-01 | 84.2% | 77.1% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.52 | 41.0 | 3.54e-01 | 84.2% | 70.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3233146 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.63 | 45.0 | 4.11e-01 | 75.0% | 56.0% |
| 4457628 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.63 | 45.0 | 3.05e-01 | 75.0% | 65.9% |
| 3693900 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.59 | 50.0 | 4.68e-01 | 98.7% | 81.8% |
| 3402741 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 46.0 | 3.81e-01 | 84.2% | 91.9% |
| 3778687 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.59 | 43.0 | 3.88e-01 | 85.5% | 56.7% |
| 3219293 | 109.4.1.1389 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatA_aux_su, TPR_8 | 0.57 | 48.0 | 2.74e-01 | 96.1% | 16.6% |
| 3651729 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.56 | 43.0 | 3.29e-01 | 85.5% | 34.4% |
| 4032961 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.54 | 41.0 | 3.99e-01 | 81.6% | 95.3% |
| 3735976 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 2.91e-01 | 84.2% | 52.0% |
| 3995121 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 2.96e-01 | 100.0% | 27.7% |
D4
medium
residues 527-615