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hypothetical_protein_pdul_cds_1036

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_1036__YP_008319978__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319978 ↗
Protein ID:: hypothetical_protein_pdul_cds_1036
Kingdom:: euk

Quality

75.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-123_148-274

PDB

Domain cluster: rep: hypothetical_protein_pqer_cds_1155__YP_009483846__Pandoravirus_quercus__2107709__D148-276

D2 medium residues 13-85

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2e9xB02	1.20.58.1020	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	41.0	3.63e-01	72.6%	88.1%
2z0qA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.54	37.0	2.81e-01	72.6%	52.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3785386	145.1.1.0 ↗	alpha arrays › F-box domain › F-box domain › F-box domain	0.61	48.0	4.73e-01	87.7%	82.5%
3250931	145.1.1.3 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like	0.57	44.0	4.46e-01	87.7%	86.7%

D3 medium residues 278-363

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hehA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.61	42.0	4.30e-01	72.1%	96.4%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.60	42.0	3.73e-01	75.6%	77.6%
4eadA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.59	44.0	4.20e-01	81.4%	79.4%
2gmyD00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.58	51.0	4.35e-01	100.0%	78.6%
7qocA01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.57	46.0	3.65e-01	89.5%	69.0%
1khdA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.57	41.0	3.94e-01	77.9%	67.0%
1xvxA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.55	38.0	3.15e-01	70.9%	98.1%
2w0gA00	1.20.58.610	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain	0.54	39.0	3.47e-01	77.9%	93.8%
2ycdA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	37.0	3.42e-01	73.3%	85.5%
5z62E00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.53	40.0	3.75e-01	82.6%	76.1%
3w0oA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.53	38.0	2.93e-01	79.1%	53.8%
4g26A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	40.0	2.85e-01	83.7%	24.7%
3qbrX00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.52	37.0	3.14e-01	76.7%	48.4%
2vq2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	41.0	3.12e-01	87.2%	49.1%
3zwbA01	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.51	42.0	3.01e-01	91.9%	69.2%
1oyzA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.51	41.0	3.03e-01	93.0%	39.6%
2l6jA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	40.0	3.75e-01	87.2%	74.8%
2pziA04	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	44.0	3.54e-01	98.8%	62.7%
7s03A01	1.10.10.1450	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	28.0	3.56e-01	100.0%	96.0%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4946426	3241.1.1.0 ↗	alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3	0.63	55.0	4.20e-01	100.0%	70.7%
3794383	109.4.1.871 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_R4	0.60	43.0	4.17e-01	76.7%	76.0%
4946805	184.1.1.6 ↗	alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_transf_3	0.59	43.0	4.61e-01	77.9%	100.0%
3482546	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.58	44.0	2.95e-01	82.6%	48.9%
3408282	109.7.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › COX5A	0.56	41.0	3.80e-01	80.2%	69.3%
3457281	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.55	40.0	3.29e-01	80.2%	40.6%
3300208	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	42.0	3.85e-01	83.7%	63.5%
3679063	109.4.1.1262 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long	0.54	42.0	2.92e-01	86.0%	32.1%
3794595	109.27.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain	0.54	42.0	3.03e-01	86.0%	41.8%
3360250	109.4.1.1262 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long	0.54	42.0	3.67e-01	86.0%	53.6%
None	—		0.54	45.0	3.49e-01	95.3%	94.2%
3637123	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	40.0	3.77e-01	81.4%	83.6%
3223754	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	39.0	3.35e-01	80.2%	80.0%
4954909	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.54	29.0	2.95e-01	91.9%	51.8%
4932569	131.1.1.0 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like	0.52	40.0	3.10e-01	84.9%	95.6%
None	—		0.52	43.0	3.40e-01	100.0%	98.1%

D4 medium residues 364-502

PDB

Domain cluster: rep: ankyrin_repeat_protein__YP_009119006__Pandoravirus_inopinatum__1605721__D167-333

D5 medium residues 503-605

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ismC01	1.25.40.240	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain	0.70	51.0	4.44e-01	75.7%	63.0%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.64	47.0	4.67e-01	78.6%	93.6%
2i6hA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	40.0	4.11e-01	92.2%	80.2%
4g12A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	43.0	3.92e-01	85.4%	88.6%
4agsB04	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	39.0	3.69e-01	81.6%	82.0%
1jogA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.51	43.0	3.94e-01	91.3%	78.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3257225	614.1.1.0 ↗	alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain	0.67	50.0	4.74e-01	78.6%	81.6%
3194704	109.6.1.3 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N	0.63	49.0	4.33e-01	83.5%	68.4%
3741603	603.1.1.5 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N	0.63	46.0	4.34e-01	76.7%	92.0%
3750890	109.3.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank	0.60	48.0	3.69e-01	86.4%	53.5%
3291091	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.58	46.0	4.27e-01	85.4%	96.3%
3411154	109.4.1.139 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin	0.51	41.0	3.02e-01	88.3%	69.8%