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hypothetical_protein_pdul_cds_1038

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_1038__YP_008319981__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319981 ↗
Protein ID:: hypothetical_protein_pdul_cds_1038
Kingdom:: euk

Quality

71.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-41

PDB

Domain cluster: rep: hypothetical_protein_psal_cds_1385__YP_009430152__Pandoravirus_salinus__1349410__D6-52

D2 medium residues 151-281

PDB

D3 medium residues 282-395

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4u72A01	1.20.58.480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	51.0	4.24e-01	100.0%	87.8%
3vldA02	1.25.40.580	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	46.0	4.24e-01	93.9%	65.4%
2wviA00	1.25.40.430	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	44.0	3.94e-01	97.4%	58.1%
2vxgA02	1.10.220.100	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1	0.57	40.0	4.53e-01	85.1%	100.0%
4nq0A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	51.0	3.95e-01	100.0%	66.5%
4dloB02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	50.0	5.05e-01	100.0%	99.1%
3eslA02	1.25.40.930	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	40.0	3.99e-01	86.0%	70.6%
3beeA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	42.0	4.58e-01	96.5%	98.9%
7tj4A01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	39.0	3.86e-01	93.0%	68.3%
4wz9A04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.56	48.0	3.54e-01	97.4%	51.8%
3ceqA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	49.0	3.82e-01	97.4%	50.0%
1vdyA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	47.0	4.45e-01	95.6%	87.9%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	48.0	4.31e-01	98.2%	71.5%
2lw1A00	1.10.287.380	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain	0.54	31.0	3.48e-01	80.7%	72.9%
4aciA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	44.0	3.89e-01	92.1%	86.9%
5mi7A03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.53	39.0	3.09e-01	78.1%	67.0%
4gywA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	38.0	3.90e-01	100.0%	81.0%
7qihA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	37.0	3.94e-01	100.0%	84.2%
2pfdA03	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.52	41.0	3.51e-01	88.6%	83.7%
2pbiA02	1.10.1240.60	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.51	34.0	3.60e-01	82.5%	77.2%
1pduA00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.50	40.0	3.26e-01	87.7%	80.9%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4405002	109.4.1.218 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP	0.61	48.0	4.37e-01	95.6%	63.5%
3023263	109.4.1.200 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14	0.59	44.0	4.54e-01	99.1%	83.2%
3933570	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.56	40.0	4.27e-01	83.3%	86.0%
3669281	109.4.1.1336 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3	0.56	42.0	4.17e-01	98.2%	76.3%
3220686	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	48.0	4.54e-01	100.0%	93.8%
4001943	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.55	41.0	4.03e-01	98.2%	72.5%
3924754	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.55	49.0	3.40e-01	98.2%	65.8%
3518142	109.4.1.22 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N	0.54	47.0	4.12e-01	98.2%	62.9%
3606098	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	42.0	4.03e-01	92.1%	72.3%
3626316	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.54	38.0	3.71e-01	99.1%	64.6%
4338603	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.53	37.0	3.67e-01	100.0%	65.6%
4950520	109.4.1.202 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16	0.53	37.0	3.97e-01	96.5%	86.3%
3466334	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.53	36.0	3.49e-01	70.2%	83.1%
3711973	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.52	37.0	2.80e-01	73.7%	73.1%
3352713	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.52	39.0	3.30e-01	78.1%	94.1%
3475121	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	34.0	3.00e-01	81.6%	44.6%
3968813	5076.2.1.7 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › UPF0259	0.51	36.0	3.06e-01	73.7%	97.1%
5076808	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.51	33.0	3.32e-01	100.0%	64.3%
3740645	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.51	37.0	4.01e-01	96.5%	94.4%
3413130	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.51	41.0	3.25e-01	97.4%	40.0%
3186833	5059.1.1.8 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA	0.50	39.0	3.59e-01	100.0%	61.9%

D4 medium residues 396-510

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	50.0	4.32e-01	86.1%	89.8%
1n4kA02	1.25.10.30	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain	0.63	49.0	4.60e-01	85.2%	92.6%
3qmlD00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.62	55.0	4.21e-01	98.3%	66.3%
8carA01	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.62	54.0	3.81e-01	96.5%	39.9%
3t33A00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.58	50.0	3.49e-01	97.4%	35.4%
1xd4A04	1.10.840.10	Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain	0.57	46.0	3.78e-01	87.8%	62.8%
4m7cB00	1.25.40.210	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain	0.56	46.0	3.87e-01	89.6%	54.5%
1ujnA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.56	44.0	3.94e-01	85.2%	97.0%
3zpjA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	46.0	3.28e-01	94.8%	30.1%
2aw6A02	1.25.40.400	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	46.0	3.75e-01	93.9%	70.6%
2wpvE00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	46.0	3.58e-01	98.3%	42.9%
3bqoA00	1.25.40.210	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain	0.53	44.0	3.68e-01	90.4%	53.5%
2a2fX02	1.20.58.670	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D	0.53	41.0	3.98e-01	81.7%	97.7%
6t0bf00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.53	41.0	4.28e-01	91.3%	95.1%
2qeuB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.52	42.0	4.01e-01	85.2%	83.5%
2fbnA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	43.0	3.97e-01	95.7%	80.4%
2qfcA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	44.0	3.34e-01	96.5%	54.6%
2qcvA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.50	43.0	3.30e-01	94.8%	54.2%
4b0zA00	1.25.40.990	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	43.0	3.55e-01	99.1%	53.7%
2lsgA00	1.20.58.1280	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain	0.50	39.0	4.14e-01	86.1%	100.0%

ECOD (30)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2818706	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.64	56.0	4.56e-01	99.1%	94.3%
3867041	109.3.1.6 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TRP_2	0.63	53.0	4.01e-01	92.2%	42.4%
3772018	109.3.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank	0.61	52.0	4.56e-01	93.0%	70.3%
3887896	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.61	53.0	4.53e-01	100.0%	60.0%
3484250	109.6.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF	0.60	52.0	3.97e-01	93.9%	56.2%
3735849	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.59	53.0	4.12e-01	100.0%	58.0%
3748383	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.58	50.0	4.05e-01	96.5%	47.8%
3188960	109.4.1.1273 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3	0.58	51.0	3.71e-01	100.0%	66.7%
3492161	109.6.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N	0.57	50.0	3.35e-01	97.4%	32.2%
3472555	109.6.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF	0.57	45.0	3.45e-01	85.2%	57.8%
3526726	109.6.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF	0.57	48.0	3.86e-01	93.0%	62.2%
3716914	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	48.0	3.67e-01	96.5%	39.7%
3578314	226.1.1.0 ↗	a+b two layers › POZ domain › POZ domain › POZ domain	0.56	42.0	3.85e-01	85.2%	58.7%
3786195	109.6.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF	0.56	46.0	3.37e-01	89.6%	44.0%
3171603	109.6.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N	0.56	46.0	3.12e-01	90.4%	31.3%
3517321	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	48.0	3.38e-01	96.5%	45.8%
3653311	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.55	45.0	4.35e-01	93.0%	82.2%
4881792	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.55	45.0	4.26e-01	93.0%	100.0%
3587180	109.4.1.250 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RNPP_C	0.54	47.0	3.97e-01	98.3%	62.0%
3606875	109.4.1.1774 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CFAP46_N	0.53	40.0	3.69e-01	79.1%	96.7%
3600220	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.53	42.0	3.84e-01	82.6%	84.0%
3737901	109.4.1.339 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC-Trs85	0.53	45.0	3.63e-01	97.4%	76.4%
3317626	109.4.1.285 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSMD12-CSN4_N	0.53	45.0	3.48e-01	97.4%	41.7%
3671771	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.53	43.0	4.38e-01	91.3%	95.7%
3693900	226.1.1.0 ↗	a+b two layers › POZ domain › POZ domain › POZ domain	0.53	35.0	3.70e-01	93.0%	76.8%
3279540	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	45.0	3.96e-01	100.0%	94.6%
4214723	109.4.1.1248 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2753	0.51	43.0	4.19e-01	95.7%	100.0%
3280862	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	44.0	4.07e-01	100.0%	98.0%
3414246	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	43.0	4.08e-01	97.4%	95.7%
None	—		0.50	43.0	3.80e-01	100.0%	89.7%

D5 medium residues 511-616

PDB

Domain cluster: rep: hypothetical_protein_pdul_cds_1036__YP_008319978__Pandoravirus_dulcis__1349409__D503-605