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hypothetical_protein_pdul_cds_172

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_172__YP_008318766__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318766 ↗
Protein ID:
hypothetical_protein_pdul_cds_172
Kingdom:
euk

Quality

77.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-114
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_339__YP_009481023__Pandoravirus_macleodensis__2107707__D23-128
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 31.0 3.21e-01 72.9% 53.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.56 47.0 4.46e-01 93.8% 77.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.56 43.0 4.51e-01 94.8% 91.9%
2rq1A00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 43.0 4.12e-01 81.2% 79.8%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.55 41.0 3.55e-01 77.1% 82.5%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 46.0 4.46e-01 92.7% 82.4%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 41.0 4.28e-01 93.8% 90.5%
3iv7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.55 46.0 3.72e-01 94.8% 83.7%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 43.0 3.85e-01 88.5% 91.6%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.54 46.0 3.66e-01 100.0% 78.4%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.54 43.0 3.47e-01 92.7% 60.5%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 40.0 3.81e-01 81.2% 83.9%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 42.0 3.82e-01 88.5% 88.1%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 3.76e-01 92.7% 94.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 37.0 4.00e-01 75.0% 85.7%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 42.0 4.14e-01 93.8% 96.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741875 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.60 42.0 4.33e-01 88.5% 75.3%
3796558 188.1.1.0 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.59 51.0 3.98e-01 95.8% 50.0%
4662596 1075.1.1.19 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_4 0.59 46.0 3.46e-01 82.3% 48.3%
5084066 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 44.0 3.48e-01 81.2% 69.8%
3098405 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.57 45.0 3.58e-01 85.4% 77.9%
3478046 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 45.0 3.69e-01 91.7% 74.4%
3189448 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 43.0 3.43e-01 85.4% 85.4%
3973066 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.54 47.0 3.44e-01 99.0% 71.4%
3623877 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.54 44.0 3.81e-01 91.7% 83.1%
3933574 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.54 44.0 3.82e-01 90.6% 85.1%
4648748 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 40.0 3.20e-01 80.2% 79.0%
5000678 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 40.0 3.97e-01 95.8% 76.0%
3625495 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.53 43.0 3.67e-01 87.5% 79.4%
4146989 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.52 39.0 2.95e-01 81.2% 71.2%
3493369 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 46.0 4.24e-01 100.0% 92.0%
4494025 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 36.0 3.51e-01 72.9% 78.1%
5001017 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 43.0 3.44e-01 94.8% 84.5%
3349693 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 40.0 2.97e-01 86.5% 90.8%
3617413 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.50 42.0 3.99e-01 93.8% 87.8%
D2 high residues 148-245
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_657__YP_009483348__Pandoravirus_quercus__2107709__D159-244