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hypothetical_protein_pdul_cds_243

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_243__YP_008318869__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008318869 ↗
Protein ID:: hypothetical_protein_pdul_cds_243
Kingdom:: euk

Quality

72.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-116

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.59	36.0	3.72e-01	89.2%	64.1%
4i0xH00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.59	35.0	3.70e-01	84.3%	65.8%
4nqfA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.57	44.0	3.73e-01	84.3%	89.7%
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.55	39.0	4.09e-01	96.4%	79.2%
3rvyA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	37.0	3.45e-01	83.1%	54.2%
1gs0A01	1.20.142.10	Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain	0.55	42.0	3.71e-01	84.3%	57.4%
1nafA02	1.20.58.160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	36.0	3.62e-01	90.4%	65.9%
6q45G01	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.54	32.0	2.69e-01	85.5%	31.5%
2fh5A01	3.30.450.60	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.54	39.0	3.47e-01	75.9%	100.0%
2vs0A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.54	34.0	3.48e-01	84.3%	64.6%
2lhjA01	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.53	31.0	3.23e-01	84.3%	58.7%
1b0bA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	42.0	3.58e-01	90.4%	51.1%
3edvB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	37.0	3.12e-01	84.3%	45.6%
4dxwA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	36.0	3.30e-01	86.7%	54.5%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.51	39.0	3.51e-01	96.4%	58.8%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4511776	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.64	37.0	3.35e-01	90.4%	41.8%
3456352	109.4.1.1266 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB	0.61	43.0	2.80e-01	74.7%	41.0%
3858549	109.46.1.6 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH_Armc9	0.58	45.0	3.73e-01	83.1%	90.0%
4106151	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.58	36.0	3.64e-01	95.2%	61.2%
3566226	196.1.1.1 ↗	alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS	0.56	43.0	3.80e-01	84.3%	61.6%
4014515	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.55	33.0	3.24e-01	92.8%	51.6%
3190417	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.53	41.0	3.80e-01	85.5%	63.6%
4436750	2003.1.5.27 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAS	0.53	40.0	2.97e-01	86.7%	73.6%
3706056	604.22.1.0 ↗	alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain	0.52	37.0	3.73e-01	96.4%	72.9%
3559718	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.51	41.0	3.71e-01	84.3%	68.2%
3543090	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	40.0	3.72e-01	84.3%	72.4%

D2 high residues 123-231

PDB

D3 high residues 256-361_374-396

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wrjA01	3.30.160.70	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain	0.63	27.0	3.60e-01	82.2%	74.6%
5tdeA01	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.56	38.0	3.68e-01	96.9%	60.4%
4bhbA01	3.30.160.70	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain	0.55	25.0	3.32e-01	82.2%	78.6%
1wr2A01	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.51	40.0	3.76e-01	96.9%	68.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2325446	2484.2.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N	0.62	27.0	3.51e-01	83.7%	69.3%
3272715	2484.2.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N	0.62	29.0	3.85e-01	83.7%	81.4%
5037858	2484.2.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain	0.59	27.0	3.50e-01	82.2%	77.1%
3979087	4100.1.1.7 ↗	a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115	0.56	29.0	3.85e-01	87.6%	92.9%
4953855	2484.2.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N	0.52	26.0	3.30e-01	82.2%	78.7%

D4 high residues 399-496

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp1179__YP_009120148__Pandoravirus_inopinatum__1605721__D70-169

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19249.5 best	DUF5897	26.3	7.70e-06	92.9%	29.5%