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hypothetical_protein_pdul_cds_352
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_352__YP_008319041__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319041 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_352
- Kingdom:
- euk
Quality
73.2
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-170
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xaaA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.76 | 70.0 | 5.55e-01 | 100.0% | 91.4% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.73 | 67.0 | 5.30e-01 | 100.0% | 79.5% |
| 4apmA01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.63 | 33.0 | 3.43e-01 | 99.1% | 53.4% |
| 2ll3A00 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.62 | 33.0 | 4.00e-01 | 99.1% | 81.4% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.61 | 46.0 | 3.78e-01 | 79.3% | 86.6% |
| 4durB01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.60 | 34.0 | 3.95e-01 | 100.0% | 76.5% |
| 1xkrA00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.60 | 46.0 | 3.82e-01 | 82.9% | 84.4% |
| 4hynB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.60 | 48.0 | 3.96e-01 | 85.6% | 84.8% |
| 4gc8B00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.59 | 47.0 | 4.03e-01 | 84.7% | 86.2% |
| 3qtaB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.56 | 46.0 | 3.78e-01 | 87.4% | 82.9% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 44.0 | 4.24e-01 | 100.0% | 78.2% |
| 4mzuF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 49.0 | 4.44e-01 | 99.1% | 74.3% |
| 2hp7A00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.54 | 42.0 | 3.64e-01 | 84.7% | 86.0% |
| 4ae8D00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 44.0 | 3.88e-01 | 100.0% | 60.0% |
| 1w8kA02 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.53 | 33.0 | 3.37e-01 | 99.1% | 61.8% |
| 2prxA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 41.0 | 4.12e-01 | 100.0% | 81.6% |
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 42.0 | 4.15e-01 | 83.8% | 91.3% |
| 2dslA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 4.18e-01 | 100.0% | 82.6% |
| 7dm9A01 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.52 | 41.0 | 3.61e-01 | 85.6% | 86.1% |
| 1t8hA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.51 | 46.0 | 3.47e-01 | 100.0% | 91.2% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 4.29e-01 | 86.5% | 100.0% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 4.05e-01 | 82.0% | 97.7% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 42.0 | 3.52e-01 | 89.2% | 79.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3198216 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.73 | 66.0 | 6.07e-01 | 100.0% | 98.6% |
| 3928166 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.66 | 36.0 | 4.05e-01 | 100.0% | 69.9% |
| 3516643 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.65 | 37.0 | 4.02e-01 | 100.0% | 66.3% |
| 3437400 | 390.1.1.8 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_4 | 0.64 | 35.0 | 4.13e-01 | 100.0% | 77.3% |
| 3246100 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.64 | 35.0 | 4.12e-01 | 100.0% | 77.3% |
| 5013246 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.64 | 50.0 | 4.12e-01 | 83.8% | 85.0% |
| 3799962 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.63 | 34.0 | 3.88e-01 | 100.0% | 71.2% |
| 4949976 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.63 | 49.0 | 4.04e-01 | 82.9% | 84.5% |
| 3798115 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.62 | 35.0 | 3.88e-01 | 100.0% | 67.8% |
| 3735034 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 36.0 | 4.04e-01 | 100.0% | 74.1% |
| 3936711 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.62 | 36.0 | 4.20e-01 | 100.0% | 84.0% |
| 3465506 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.61 | 33.0 | 3.86e-01 | 100.0% | 72.5% |
| 3665558 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.61 | 33.0 | 3.84e-01 | 99.1% | 74.4% |
| None | — | 0.61 | 49.0 | 4.06e-01 | 85.6% | 85.8% | |
| 3971785 | 866.1.1.1 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM | 0.60 | 47.0 | 3.95e-01 | 83.8% | 83.7% |
| 3936709 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.59 | 33.0 | 3.69e-01 | 99.1% | 69.4% |
| 3412246 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.59 | 36.0 | 3.89e-01 | 100.0% | 71.6% |
| 223801 | 10.2.1.67 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Spike_JR1 | 0.58 | 34.0 | 3.79e-01 | 77.5% | 73.3% |
| 3217665 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.58 | 32.0 | 3.81e-01 | 100.0% | 78.7% |
| 3431022 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.58 | 32.0 | 3.62e-01 | 100.0% | 69.4% |
| 3643927 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.58 | 33.0 | 3.75e-01 | 99.1% | 75.0% |
| 3431049 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.58 | 33.0 | 3.66e-01 | 100.0% | 70.6% |
| 3340586 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.58 | 33.0 | 3.77e-01 | 100.0% | 74.1% |
| 3662364 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.57 | 33.0 | 3.69e-01 | 100.0% | 75.0% |
| 3434551 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.57 | 32.0 | 3.47e-01 | 99.1% | 65.6% |
| 3224807 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.56 | 34.0 | 3.83e-01 | 100.0% | 79.5% |
| 3226096 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.56 | 34.0 | 3.80e-01 | 100.0% | 78.8% |
| 3924676 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.56 | 34.0 | 3.65e-01 | 100.0% | 70.5% |
| 5023022 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.56 | 39.0 | 4.31e-01 | 73.9% | 100.0% |
| 3386502 | 866.1.1.0 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like | 0.55 | 44.0 | 3.87e-01 | 86.5% | 87.0% |
| 4411665 | 866.1.1.1 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM | 0.54 | 44.0 | 3.65e-01 | 87.4% | 79.5% |
| 236079 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.54 | 42.0 | 3.48e-01 | 82.9% | 86.6% |
| 4641389 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 27.0 | 3.49e-01 | 100.0% | 87.3% |
| 3267385 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.52 | 40.0 | 3.70e-01 | 82.0% | 72.4% |
| 3213559 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.51 | 38.0 | 3.97e-01 | 78.4% | 85.7% |
| 329362 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.51 | 37.0 | 3.28e-01 | 76.6% | 78.0% |
| 4567075 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.51 | 41.0 | 3.03e-01 | 85.6% | 60.4% |
| 5073275 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 40.0 | 4.10e-01 | 82.9% | 97.1% |
| 3239803 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 31.0 | 3.50e-01 | 100.0% | 78.9% |
| 3571451 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.50 | 39.0 | 3.88e-01 | 83.8% | 82.5% |
D2
medium
residues 1-56