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hypothetical_protein_pdul_cds_366

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_366__YP_008319062__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319062 ↗
Protein ID:: hypothetical_protein_pdul_cds_366
Kingdom:: euk

Quality

64.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 138-172_240-272

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gz6A00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.60	48.0	3.03e-01	88.2%	43.8%
4cczA01	3.20.20.330	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain	0.57	45.0	2.96e-01	86.8%	30.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3264093	109.3.1.171 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011	0.62	45.0	2.83e-01	77.9%	22.9%
4413333	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	48.0	3.52e-01	100.0%	54.5%

D2 medium residues 173-211_273-325_366-378

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c4bA02	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.55	23.0	2.79e-01	100.0%	56.7%
4iupB01	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.52	21.0	2.65e-01	100.0%	54.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3514864	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.57	24.0	3.10e-01	99.0%	67.3%
4208333	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.53	29.0	2.77e-01	100.0%	45.8%
3555043	4.8.1.1 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo	0.50	21.0	2.46e-01	100.0%	48.0%

D3 medium residues 212-239_326-365_379-393

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1q40D00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.56	49.0	3.90e-01	100.0%	90.9%
3fkaB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.55	47.0	4.21e-01	96.4%	88.3%
2bmoB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	47.0	3.64e-01	97.6%	76.3%
1buqA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	48.0	4.17e-01	97.6%	88.8%
3rgaA01	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	47.0	4.10e-01	100.0%	89.5%
6h05A00	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.52	42.0	3.07e-01	89.2%	80.5%
2bb6A02	2.170.130.30	Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 ›	0.51	35.0	3.26e-01	72.3%	92.5%
3cnxA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.50	44.0	3.73e-01	97.6%	91.3%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3380367	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.76	68.0	5.05e-01	96.4%	76.4%
4304652	2.2.1.0 ↗	beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins	0.71	56.0	6.06e-01	96.4%	98.6%
4383068	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.68	58.0	5.91e-01	96.4%	93.8%
3972407	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.68	64.0	4.89e-01	100.0%	96.0%
5001439	2.1.1.83 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N	0.58	41.0	4.43e-01	98.8%	88.6%
4061290	239.1.1.6 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2	0.57	40.0	4.18e-01	72.3%	90.4%
4602886	221.3.1.0 ↗	a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains	0.56	39.0	4.18e-01	72.3%	94.3%
3397689	243.1.1.91 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4518	0.55	49.0	3.97e-01	100.0%	78.1%
3218103	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.54	38.0	3.61e-01	74.7%	93.3%
4946739	239.1.1.0 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like	0.53	36.0	4.04e-01	73.5%	90.8%
4133361	221.2.1.2 ↗	a+b two layers › beta-Grasp › IF3-N › IF3-N › mIF3	0.53	41.0	3.92e-01	98.8%	70.4%
3308224	239.4.1.0 ↗	beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain	0.53	37.0	3.49e-01	73.5%	84.0%
3289863	243.1.1.63 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841	0.52	45.0	3.80e-01	97.6%	91.0%
3640847	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.52	43.0	3.16e-01	90.4%	94.1%
3217157	243.1.1.98 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_C	0.51	44.0	3.77e-01	100.0%	85.3%
4507733	239.1.1.15 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf	0.51	36.0	3.77e-01	73.5%	100.0%
4330612	2.1.1.14 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N	0.50	35.0	3.78e-01	95.2%	93.8%