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hypothetical_protein_pdul_cds_36

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_36__YP_008318581__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318581 ↗
Protein ID:
hypothetical_protein_pdul_cds_36
Kingdom:
euk

Quality

42.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-105
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 25.9 9.50e-06 82.0% 83.0%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 59.0 3.83e-01 100.0% 33.2%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.68 50.0 4.82e-01 80.3% 80.0%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 51.0 4.37e-01 91.8% 88.7%
3ltoA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.64 44.0 3.46e-01 72.1% 36.6%
4yzwA01 1.20.1370.10 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain 0.64 52.0 4.02e-01 95.1% 49.7%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 4.59e-01 88.5% 94.8%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 51.0 4.21e-01 93.4% 61.3%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 43.0 4.03e-01 72.1% 94.8%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 47.0 3.01e-01 80.3% 43.4%
1mzgB00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.61 48.0 3.82e-01 91.8% 84.6%
8gpvA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.59 52.0 4.13e-01 100.0% 61.2%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 42.0 3.94e-01 75.4% 62.7%
5jpnB01 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.56 39.0 3.81e-01 78.7% 68.1%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 42.0 3.24e-01 85.2% 67.3%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.59e-01 100.0% 68.3%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 43.0 3.41e-01 100.0% 93.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3206488 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 54.0 5.86e-01 75.4% 98.0%
4021834 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 66.0 3.90e-01 100.0% 23.7%
3206113 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.72 62.0 3.79e-01 96.7% 25.9%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 64.0 4.85e-01 100.0% 43.6%
3671903 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 47.0 5.27e-01 73.8% 97.8%
3204159 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 51.0 5.51e-01 93.4% 100.0%
3429545 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.67 53.0 4.31e-01 90.2% 60.0%
3692330 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 57.0 3.63e-01 96.7% 37.0%
3663565 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.65 45.0 3.42e-01 73.8% 60.0%
4011923 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 55.0 3.27e-01 100.0% 16.6%
3809186 109.27.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.64 53.0 3.90e-01 96.7% 68.3%
3262554 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.64 45.0 4.32e-01 77.0% 77.3%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 52.0 4.62e-01 96.7% 62.4%
4015900 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 46.0 4.85e-01 83.6% 100.0%
3493278 377.1.1.23 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › SIX1_SD 0.58 47.0 3.71e-01 100.0% 42.7%
4351860 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.56 42.0 3.08e-01 78.7% 72.7%
3661564 4299.1.1.0 ↗ alpha arrays › BSD domain › BSD domain › BSD domain 0.52 37.0 3.44e-01 77.0% 81.2%
D2 medium residues 243-301
PDB