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hypothetical_protein_pdul_cds_381
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_381__YP_008319086__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319086 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_381
- Kingdom:
- euk
Quality
64.0
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 189-345
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5aarA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.66 | 36.0 | 3.38e-01 | 74.5% | 43.2% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 38.0 | 4.33e-01 | 90.4% | 86.3% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 31.0 | 3.36e-01 | 71.3% | 70.4% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.50 | 34.0 | 3.61e-01 | 85.4% | 76.6% |
| 6xpdA01 | 1.20.1510.10 | Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain | 0.50 | 37.0 | 3.41e-01 | 76.4% | 77.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3321942 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.58 | 31.0 | 3.26e-01 | 75.8% | 55.0% |
| 3824817 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.57 | 31.0 | 3.64e-01 | 73.2% | 77.0% |
| 3460858 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 30.0 | 3.38e-01 | 73.2% | 67.0% |
| 3432370 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.55 | 39.0 | 3.10e-01 | 71.3% | 96.5% |
| 3319860 | 109.4.1.2173 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif | 0.54 | 32.0 | 2.60e-01 | 81.5% | 29.2% |
| 3422186 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.53 | 28.0 | 3.28e-01 | 72.6% | 70.5% |
| 3354086 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 37.0 | 3.00e-01 | 73.9% | 95.0% |
| 3810902 | 109.4.1.575 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF577 | 0.51 | 34.0 | 3.36e-01 | 92.4% | 61.8% |
| 3392972 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 37.0 | 3.63e-01 | 75.2% | 73.5% |
| 3383128 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.50 | 33.0 | 3.06e-01 | 83.4% | 50.7% |
| 5012120 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.50 | 27.0 | 2.98e-01 | 76.4% | 64.2% |
D2
medium
residues 371-410_425-490