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hypothetical_protein_pdul_cds_389

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_389__YP_008319095__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319095 ↗
Protein ID:
hypothetical_protein_pdul_cds_389
Kingdom:
euk

Quality

49.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 299-395
PDB
Domain cluster: rep: IMGVR_UViG_3300029959_001612-3300029959-Ga0272380_1000280741__D5-86
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 4.46e-01 89.7% 82.3%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 33.0 3.18e-01 71.1% 49.1%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.73e-01 88.7% 59.5%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 35.0 3.48e-01 88.7% 58.9%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 36.0 3.48e-01 87.6% 58.2%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 4.28e-01 100.0% 80.3%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.47e-01 97.9% 51.4%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 4.41e-01 97.9% 90.3%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 36.0 3.45e-01 100.0% 56.8%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.54 39.0 3.44e-01 100.0% 50.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 4.53e-01 99.0% 100.0%
3pesA00 3.30.300.260 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.53 33.0 3.57e-01 92.8% 73.5%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 37.0 3.34e-01 88.7% 54.0%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.48e-01 87.6% 65.4%
7xgtA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 43.0 3.19e-01 94.8% 65.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942338 815.1.1.1 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 0.84 76.0 7.53e-01 94.8% 97.0%
5070582 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.83 69.0 7.33e-01 89.7% 100.0%
4959201 815.1.1.1 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 0.82 73.0 7.42e-01 95.9% 95.8%
4946800 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 45.0 3.90e-01 79.4% 51.6%
4203680 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 42.0 3.87e-01 80.4% 56.2%
3702318 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 44.0 3.31e-01 81.4% 35.7%
3483890 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.57 44.0 3.77e-01 83.5% 86.3%
4999142 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 49.0 3.99e-01 93.8% 69.4%
3287194 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 49.0 4.04e-01 94.8% 68.0%
3494789 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.56 46.0 3.03e-01 86.6% 40.8%
3729846 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 48.0 3.77e-01 94.8% 63.4%
3967781 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 48.0 4.11e-01 94.8% 71.2%
4949072 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 50.0 4.38e-01 100.0% 82.8%
3588721 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 36.0 3.49e-01 82.5% 56.5%
3284440 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 44.0 4.00e-01 90.7% 85.5%
3476215 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.53 47.0 3.18e-01 97.9% 46.2%
3877628 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.52 47.0 3.17e-01 97.9% 43.7%
3874219 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.52 46.0 3.14e-01 97.9% 41.8%
3703106 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 2.65e-01 97.9% 19.0%
4024838 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.51 40.0 3.84e-01 84.5% 98.2%
3617977 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.51 41.0 3.81e-01 89.7% 97.6%