←Back to structures

hypothetical_protein_pdul_cds_392

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_392__YP_008319101__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319101 ↗
Protein ID:
hypothetical_protein_pdul_cds_392
Kingdom:
euk

Quality

78.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-80_169-204
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_121__YP_008436633__Pandoravirus_salinus__1349410__D68-100_227-259
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 62.0 5.86e-01 89.6% 88.5%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 62.0 4.21e-01 97.0% 75.5%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.71 60.0 4.04e-01 98.5% 24.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.71 60.0 5.61e-01 98.5% 74.1%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 59.0 4.95e-01 91.0% 67.0%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 55.0 5.18e-01 94.0% 71.6%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 56.0 4.71e-01 86.6% 72.9%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 56.0 4.91e-01 91.0% 83.2%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.69 54.0 5.47e-01 97.0% 89.2%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.68 55.0 5.67e-01 88.1% 93.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.68 60.0 5.22e-01 94.0% 81.2%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 58.0 4.97e-01 97.0% 61.3%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.68 51.0 4.97e-01 79.1% 74.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 56.0 5.55e-01 92.5% 87.3%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 50.0 4.91e-01 86.6% 74.3%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.66 56.0 5.07e-01 94.0% 76.7%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 53.0 5.30e-01 91.0% 91.2%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 52.0 4.53e-01 94.0% 57.0%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.64 55.0 4.17e-01 100.0% 41.5%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 50.0 5.02e-01 85.1% 88.1%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 48.0 4.94e-01 86.6% 87.5%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.59 51.0 3.92e-01 100.0% 45.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 49.0 4.66e-01 100.0% 80.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 53.0 4.99e-01 100.0% 84.8%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.58 49.0 3.09e-01 100.0% 82.9%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.57 41.0 4.12e-01 77.6% 94.4%
3m3mA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 42.0 3.56e-01 82.1% 48.3%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.55 47.0 4.42e-01 94.0% 86.4%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.53 36.0 3.61e-01 88.1% 70.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965736 3843.1.1.33 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Vut_1 0.79 67.0 5.71e-01 97.0% 59.0%
5078040 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.77 59.0 5.43e-01 100.0% 64.7%
5069175 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.72 48.0 4.54e-01 74.6% 57.5%
4157096 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.64 54.0 4.92e-01 92.5% 70.0%
4927173 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 45.0 4.24e-01 83.6% 65.9%
D2 high residues 83-163
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_137__YP_008318726__Pandoravirus_dulcis__1349409__D48-141