←Back to structures

hypothetical_protein_pdul_cds_397

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_397__YP_008319109__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319109 ↗
Protein ID:
hypothetical_protein_pdul_cds_397
Kingdom:
euk

Quality

72.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 63-235
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271
D2 medium residues 236-328
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_52__YP_009480736__Pandoravirus_macleodensis__2107707__D256-341
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ygmA01 1.10.220.90 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Mistic 0.64 55.0 5.59e-01 94.6% 100.0%
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.63 44.0 4.97e-01 91.4% 98.5%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 50.0 4.46e-01 100.0% 59.9%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.62 47.0 4.23e-01 91.4% 59.1%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.58 39.0 3.83e-01 94.6% 64.6%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 50.0 4.76e-01 98.9% 92.0%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.57 42.0 3.61e-01 80.6% 83.7%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 50.0 4.70e-01 98.9% 89.3%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 33.0 3.43e-01 88.2% 63.1%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 47.0 4.55e-01 100.0% 83.8%
4f7aA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 47.0 3.06e-01 100.0% 91.4%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 4.44e-01 100.0% 82.9%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 35.0 3.86e-01 91.4% 81.1%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 47.0 4.06e-01 100.0% 66.9%
1b8bA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 46.0 2.88e-01 98.9% 24.2%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 37.0 3.95e-01 87.1% 89.6%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 43.0 4.22e-01 93.5% 90.0%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 42.0 3.59e-01 96.8% 52.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 40.0 3.75e-01 84.9% 91.5%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 36.0 3.86e-01 89.2% 92.0%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 43.0 3.36e-01 92.5% 100.0%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.50 39.0 3.69e-01 88.2% 68.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4540191 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.71 53.0 5.79e-01 100.0% 98.7%
3467430 109.4.1.843 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM 0.63 53.0 3.37e-01 100.0% 18.7%
3996669 109.4.1.1492 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA, PF31007 0.62 57.0 3.46e-01 100.0% 17.7%
3263278 109.4.1.1133 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › C23H4_16c_N 0.61 45.0 4.19e-01 98.9% 60.8%
3729854 109.49.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.57 49.0 3.63e-01 97.8% 45.4%
3583634 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 3.64e-01 98.9% 41.0%
4416227 604.34.1.1 ↗ alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.55 39.0 3.87e-01 94.6% 69.0%
3929321 109.4.1.934 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.55 45.0 3.65e-01 100.0% 44.7%
3182325 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.51e-01 100.0% 41.4%
3218642 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 42.0 3.91e-01 84.9% 83.5%
3291430 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.53 46.0 4.08e-01 100.0% 77.1%
4487991 109.4.1.2182 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, PF31234, PF31236 0.53 45.0 2.66e-01 100.0% 18.3%
3456183 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 4.46e-01 97.8% 95.0%
3592496 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 3.44e-01 96.8% 62.4%
1145756 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.50 36.0 3.41e-01 87.1% 60.7%